Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1619 ATGACATCTGCAAATCCTTATTTTGATGATATCCGGAACAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGCGATTCTGCTCGAGCTGGAGGAAAACCTAACGTAGTCTCCAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATACCAAACTTTTGGATGTGTGGGCATATACCCATACTATAGCAAGCTGAAACACGAATCTCAGTGTATATATCGACCCTATAACTGTCCCTATGCGGGTTCGGAATGCTCGGTTATTGGTGACATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTTGGAATGGCACCTGTCTACATAGCTTTCTTGCGGTTTATGGGCGACGATAATGAAGCAAAGAACTACAGTTACAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGAAGTATTCGGGACAGTCATCGGAAGGTCCGAGATAGTTTTGACGGTCTTATTATCCAACGTAATATGGCACTCTTCTTCTCAGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 915 45.25 MTSANPYFDDIRNKPEVIDPPQDDDMMDVSESVSDSARAGGKPNVVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCIYRPYNCPYAGSECSVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21896972 21902297 + PI0017611.1 Cmetu10g1619 368482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1619 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Cmetu10g1619 304 SUPERFAMILY TRAF domain-like 109 301 - -
Cmetu10g1619 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 108 IPR013083 -
Cmetu10g1619 304 MobiDBLite consensus disorder prediction 1 44 - -
Cmetu10g1619 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Cmetu10g1619 304 SUPERFAMILY RING/U-box 48 96 - -
Cmetu10g1619 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Cmetu10g1619 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 36 303 - -
Cmetu10g1619 304 CDD RING-HC_SIAHs 54 92 - -
Cmetu10g1619 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Cmetu10g1619 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Cmetu10g1619 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 107 - -
Cmetu10g1619 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Cmetu10g1619 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cmetu10g1619 304 CDD Sina 170 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1619 K04506 - - csv:101205198 635.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1224 Cmetu-Chr5:22541289 Cmetu10g1619 Cmetu-Chr10:21896972 2.50E-124 dispersed
Cmetu09g0559 Cmetu-Chr9:10711690 Cmetu10g1619 Cmetu-Chr10:21896972 2.40E-169 dispersed
Cmetu10g1619 Cmetu-Chr10:21896972 Cmetu11g0718 Cmetu-Chr11:1000401 1.60E-99 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0445 . 83 570 C3H Transcription Factor Family AT2G31510 76.7 2.1e-231 798.5
Cmetu03g0957 . 77 529 C3H Transcription Factor Family AT2G31510 78.6 2.8e-223 771.5
Cmetu03g0957 . 60 522 C3H Transcription Factor Family AT2G31770 59.3 2.8e-168 589.0
Cmetu05g0445 . 52 544 C3H Transcription Factor Family AT2G31770 56.0 2.8e-168 589.0
Cmetu05g0445 . 66 529 C3H Transcription Factor Family AT2G31760 58.3 9.2e-169 590.5
Cmetu03g0957 . 60 529 C3H Transcription Factor Family AT2G31760 58.1 1.5e-166 583.2
Cmetu08g1631 . 13 170 C3H Transcription Factor Family AT5G06490 54.8 1.5e-47 186.4
Cmetu08g1631 . 13 170 C3H Transcription Factor Family AT5G06490 54.8 1.5e-47 186.4
Cmetu09g1076 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.4e-76 281.2
Cmetu02g1813 . 1 305 C3H Transcription Factor Family AT1G11020 75.0 2.1e-134 475.7
Cmetu04g1459 . 62 220 C3H Transcription Factor Family AT1G50440 75.6 1.0e-66 250.4
Cmetu08g0175 . 5 367 C3H Transcription Factor Family AT5G08750 61.2 3.6e-119 425.2
Cmetu05g1652 . 1 428 C3H Transcription Factor Family AT3G16090 71.3 5.3e-166 581.3
Cmetu03g1808 . 31 185 C3H Transcription Factor Family AT1G22510 65.8 3.2e-56 215.3
Cmetu09g1076 . 1 225 C3H Transcription Factor Family AT5G38895 58.4 1.2e-73 273.9
Cmetu08g0953 . 16 225 C3H Transcription Factor Family AT1G19310 61.2 2.3e-71 265.8
Cmetu03g0100 . 2 163 C3H Transcription Factor Family AT1G19310 62.0 1.3e-50 196.8
Cmetu03g1808 . 35 185 C3H Transcription Factor Family AT1G72175 67.5 1.9e-53 205.7
Cmetu04g0973 . 9 177 C3H Transcription Factor Family AT5G48655 51.1 3.2e-40 162.2
Cmetu08g1384 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 4.6e-159 557.8
Cmetu03g1881 . 6 162 C3H Transcription Factor Family AT5G07040 61.7 9.8e-45 176.8
Cmetu02g0736 . 1 395 C3H Transcription Factor Family AT1G18470 73.7 1.1e-172 603.2
Cmetu03g0957 . 60 522 C3H Transcription Factor Family AT2G31770 59.3 2.8e-168 589.0
Cmetu05g0445 . 52 544 C3H Transcription Factor Family AT2G31770 56.0 2.8e-168 589.0
Cmetu05g0445 . 66 529 C3H Transcription Factor Family AT2G31760 58.3 9.2e-169 590.5
Cmetu03g0957 . 60 529 C3H Transcription Factor Family AT2G31760 58.1 1.5e-166 583.2
Cmetu01g2657 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 2.4e-95 345.9
Cmetu01g0145 . 46 273 C3H Transcription Factor Family AT5G55970 67.7 1.1e-90 330.5
Cmetu08g0175 . 5 367 C3H Transcription Factor Family AT5G63780 57.6 5.4e-115 411.4
Cmetu04g3121 . 1 424 C3H Transcription Factor Family AT3G58030 53.7 3.4e-108 389.0
Cmetu01g2657 . 35 345 C3H Transcription Factor Family AT4G26580 62.5 2.7e-113 405.6
Cmetu01g0145 . 39 336 C3H Transcription Factor Family AT4G26580 61.6 1.8e-109 392.9
Cmetu09g1280 . 20 173 C3H Transcription Factor Family AT4G10150 50.6 4.0e-42 168.7
Cmetu08g0660 . 1 471 C3H Transcription Factor Family AT5G01960 69.1 1.9e-167 585.9
Cmetu10g1321 . 1 463 C3H Transcription Factor Family AT5G01960 59.3 2.9e-152 535.4
Cmetu11g0663 . 1 156 C3H Transcription Factor Family AT2G04240 58.6 5.0e-44 174.5
Cmetu01g2423 . 1 149 C3H Transcription Factor Family AT2G04240 57.1 1.4e-38 156.4
Cmetu05g0470 . 66 275 C3H Transcription Factor Family AT5G19430 54.9 8.0e-57 217.6
Cmetu07g1879 . 130 585 C3H Transcription Factor Family AT5G45290 51.8 2.1e-102 370.2
Cmetu05g0470 . 73 275 C3H Transcription Factor Family AT5G12310 64.8 2.5e-58 222.6
Cmetu02g1872 . 71 364 C3H Transcription Factor Family AT5G05810 53.5 2.5e-76 283.1
Cmetu03g1225 . 58 216 C3H Transcription Factor Family AT5G05830 67.3 1.8e-59 226.1
Cmetu08g1884 . 70 220 C3H Transcription Factor Family AT5G05830 59.6 7.1e-48 187.6
Cmetu08g0797 . 12 151 C3H Transcription Factor Family AT5G05830 58.6 6.5e-41 164.5
Cmetu09g1076 . 1 226 C3H Transcription Factor Family AT5G15790 60.8 5.9e-75 277.7
Cmetu03g1911 . 1 235 C3H Transcription Factor Family AT3G55530 80.9 7.2e-96 347.4
Cmetu01g1181 . 1 273 C3H Transcription Factor Family AT1G63900 76.3 5.2e-118 421.0
Cmetu06g0468 . 10 393 C3H Transcription Factor Family AT2G44580 53.3 7.7e-120 427.6
Cmetu07g0726 . 3 314 C3H Transcription Factor Family AT5G20910 58.7 1.2e-99 360.1
Cmetu05g1652 . 119 419 C3H Transcription Factor Family AT1G65040 68.0 6.6e-109 391.0
Cmetu08g0953 . 17 227 C3H Transcription Factor Family AT2G23780 62.3 1.4e-73 273.1
Cmetu03g0100 . 2 165 C3H Transcription Factor Family AT2G23780 53.5 1.3e-42 170.2
Cmetu04g1536 . 1 318 C3H Transcription Factor Family AT3G10810 54.2 1.9e-78 290.4
Cmetu09g1080 . 1 170 C3H Transcription Factor Family AT1G63840 58.0 4.4e-48 188.0
Cmetu11g2005 . 1 152 C3H Transcription Factor Family AT1G63840 51.6 4.4e-40 161.4
Cmetu09g0427 . 1 354 C3H Transcription Factor Family AT1G68070 62.3 1.1e-117 420.2
Cmetu06g0430 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 1.4e-85 313.5
Cmetu07g2272 . 4 181 C3H Transcription Factor Family AT1G76410 56.1 1.6e-51 199.5
Cmetu06g0558 . 6 154 C3H Transcription Factor Family AT1G76410 55.9 3.3e-44 175.3
Cmetu03g0748 . 1 397 C3H Transcription Factor Family AT1G80400 54.7 2.5e-113 406.0
Cmetu06g0558 . 13 145 C3H Transcription Factor Family AT2G17450 57.8 4.6e-38 154.8
Cmetu05g0445 . 83 570 C3H Transcription Factor Family AT2G31510 76.7 2.1e-231 798.5
Cmetu03g0957 . 77 529 C3H Transcription Factor Family AT2G31510 78.6 2.8e-223 771.5
Cmetu08g1631 . 7 169 C3H Transcription Factor Family AT2G35910 61.8 3.5e-53 205.3
Cmetu04g1794 . 11 158 C3H Transcription Factor Family AT2G35910 55.2 1.1e-43 173.7
Cmetu06g1281 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 3.6e-128 454.9
Cmetu05g1224 . 35 324 C3H Transcription Factor Family AT2G41980 74.5 4.7e-128 454.5
Cmetu06g0293 . 62 319 C3H Transcription Factor Family AT2G41980 80.2 4.7e-128 454.5
Cmetu10g1619 . 47 304 C3H Transcription Factor Family AT2G41980 79.8 1.1e-126 449.9
Cmetu09g0559 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 2.2e-125 445.7
Cmetu11g0718 . 43 273 C3H Transcription Factor Family AT2G41980 62.5 2.4e-92 335.9
Cmetu06g2606 . 126 400 C3H Transcription Factor Family AT3G06140 62.0 6.8e-94 341.3
Cmetu04g1396 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 6.4e-86 314.7
Cmetu02g1086 . 58 366 C3H Transcription Factor Family AT3G47990 69.6 5.1e-127 451.1
Cmetu12g1918 . 64 204 C3H Transcription Factor Family AT3G47990 61.8 9.5e-49 191.0
Cmetu07g2272 . 4 185 C3H Transcription Factor Family AT1G20823 57.3 4.2e-53 204.9
Cmetu06g0558 . 13 154 C3H Transcription Factor Family AT1G20823 58.9 2.4e-45 179.1
Cmetu11g0764 . 40 411 C3H Transcription Factor Family AT3G18930 53.8 3.3e-84 309.3
Cmetu06g2558 . 20 235 C3H Transcription Factor Family AT5G66070 73.1 2.2e-74 275.8
Cmetu08g1127 . 3 272 C3H Transcription Factor Family AT5G02750 53.0 1.6e-66 250.0
Cmetu02g0736 . 5 473 C3H Transcription Factor Family AT1G73950 71.9 2.4e-194 675.2
Cmetu09g1280 . 1 160 C3H Transcription Factor Family AT1G33480 51.9 3.1e-40 162.5
Cmetu09g0427 . 15 252 C3H Transcription Factor Family AT2G01735 61.3 4.2e-74 275.0
Cmetu06g0430 . 60 269 C3H Transcription Factor Family AT2G01735 52.8 1.0e-51 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000123 7 13 5 5 9 4 10 5 6 5 4 3 7 6 6 10 5 13 9 4 6 6 7 7 7 5 6 22 16 5 223