Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1622 ATGGGTCCGTCGGAGAAAGATATGGTGGTAAATCAACTGCCGGAGTCTGTGAGGGAGATTTCAGGGCTTCCTGAGTGTAACGGCATCTGTAAGAAGATGTATGGGGACCTGATTCGAAGAGTCAAATTATTGAGCCCTCTGTTTGAAGAATTAAGAGATGGAGAAGAAGAAGTTGGATTCGATGTTCTTAAGGGCTTGGAATTGCTTAAAATTGCTTTGGATTCTGCTATTGAGCTTCTTAAGTCGGTCAGCCGAGGTAGCAAGCTATTTCAGGCTTCGCAGTCGAAAAAGATTGGACTCGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCGGACGAGGTTCGAGAACAGACTGAACTTGTTCATGCGCAATTCAAACGAGCTAAAGAGCGAGCAAATTTAGCTGATACACAATTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCCGACCCTGCAGTATTGAAGAGGCTTTCTGAAAAGCTGCATCTTCGAACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGTTGGTGATCTCAAGTGATGGAGACCCCGAGGATGTTTTTGGTAAAATGTCAATCATTTTAAAGAAGTTGAAGGATTTTGTACAATCAGAAAACCCGGAAGTTGAAACTTCTCAAGACGAAAAAACTACAACCATTAAACACAGATCTCCTGTCATCCCCGATGATTTCAGATGCCCCATATCTCTCGAATTGATGAGGGATCCAGTCATCGTTTCCACCGGGCAGACATATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACTTGTCCAAAATCTCAGCAAGCTTTACTACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTGTGGTGCGAGAACAATGGTGTTGAACTGCCAAAGAAGCAAGGTAGCTGTAGAAACAAGAAAGCCGGAAACAATGTTTCAGACTGTGATCGGTCAGCCATCGATGCCTTACTAGTAAAATTGGTAAATGGATCTCCAGAACAAAAAAGATCAGCAGCAGGTGAGCTCCGGTTACTAGCGAAAAGGAATTCAGATAACAGAATTTGTATTGCTGAGGCAGGAGCTATTCCGTTCCTTGTTGAACTATTATCCTCAAACGACACTAGGACCCAGGAGCATGCAGTTACAGCATTATTGAATCTTTCAATCAACGACGGTAACAAAAGAACCATTGTCGATTTACGAGCCATACCTGCTATAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTATCCGTAATTGACGAGAACAAGGTTGCAATCGGAGCAGCTGGGGCAATTCCTGCTCTTATTAGTTTGCTTCGAGAAGGTACACCGAGAGGAAAGAAAGATGCTGCCACTGCTATTTTCAATCTATCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGTATTGTGAATCCACTTATGGGATTTCTAAAAGATGCTGGAGGTGGAATGGTGGATGAAGCTCTAGCTATTCTAGCAATTCTTGCAACTCACCATGAAGGAAAAACAGCAATAGGGGAAGCTGAGCCGATGACAATTCTGTTGGAGTTCATCAGAACAGGTTCTCCACGAAACCGGGAGAATGCTGCTGCTGTGCTGTGGTCGCTTTGTAGTACGGATTTCGAGCAGTTGAAGCTAGCTAGAGAACATGGGGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGCACAGAGAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTGTTTCAACGTTTCGATGGGCCATCACCTAATCTATAA 1884 42.99 MGPSEKDMVVNQLPESVREISGLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEEVGFDVLKGLELLKIALDSAIELLKSVSRGSKLFQASQSKKIGLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERANLADTQLDKDLAILQEEKDPDPAVLKRLSEKLHLRTINDLKKESLAIHELVISSDGDPEDVFGKMSIILKKLKDFVQSENPEVETSQDEKTTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALLHTALTPNYVLKSLIALWCENNGVELPKKQGSCRNKKAGNNVSDCDRSAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDGNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKTAIGEAEPMTILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTERAKRKAGSILELFQRFDGPSPNL 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21513512 21516810 - PI0012043.1 Cmetu10g1622 368485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1622 627 CDD RING-Ubox_PUB 247 299 IPR045210 -
Cmetu10g1622 627 PANTHER U BOX DOMAIN-CONTAINING 31 618 - -
Cmetu10g1622 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Cmetu10g1622 627 FunFam RING-type E3 ubiquitin transferase 328 622 - -
Cmetu10g1622 627 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Cmetu10g1622 627 FunFam RING-type E3 ubiquitin transferase 246 319 - -
Cmetu10g1622 627 Gene3D - 324 453 IPR011989 -
Cmetu10g1622 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 319 IPR013083 -
Cmetu10g1622 627 SUPERFAMILY ARM repeat 340 617 IPR016024 -
Cmetu10g1622 627 SMART arm_5 414 454 IPR000225 GO:0005515
Cmetu10g1622 627 SMART arm_5 537 577 IPR000225 GO:0005515
Cmetu10g1622 627 SMART arm_5 496 536 IPR000225 GO:0005515
Cmetu10g1622 627 SMART arm_5 455 495 IPR000225 GO:0005515
Cmetu10g1622 627 SMART arm_5 373 413 IPR000225 GO:0005515
Cmetu10g1622 627 FunFam RING-type E3 ubiquitin transferase 6 119 - -
Cmetu10g1622 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 426 IPR000225 GO:0005515
Cmetu10g1622 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 508 IPR000225 GO:0005515
Cmetu10g1622 627 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
Cmetu10g1622 627 SUPERFAMILY RING/U-box 244 321 - -
Cmetu10g1622 627 Gene3D - 9 119 IPR036537 GO:0007166
Cmetu10g1622 627 Gene3D - 456 619 IPR011989 -
Cmetu10g1622 627 Pfam Armadillo/beta-catenin-like repeat 456 494 IPR000225 GO:0005515
Cmetu10g1622 627 Pfam Armadillo/beta-catenin-like repeat 373 412 IPR000225 GO:0005515
Cmetu10g1622 627 Pfam Armadillo/beta-catenin-like repeat 414 453 IPR000225 GO:0005515
Cmetu10g1622 627 Pfam U-box domain 246 316 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1622 K27628 - - csv:101221065 1175.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0540 Cmetu-Chr4:3083257 Cmetu10g1622 Cmetu-Chr10:21513512 8.60E-14 dispersed
Cmetu04g0586 Cmetu-Chr4:17212007 Cmetu10g1622 Cmetu-Chr10:21513512 4.50E-07 dispersed
Cmetu10g1622 Cmetu-Chr10:21513512 Cmetu12g1883 Cmetu-Chr12:23520530 4.60E-98 dispersed
Cmetu10g1622 Cmetu-Chr10:21513512 Cmetu11g2533 Cmetu-Chr11:6553838 4.40E-125 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010303 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32