Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1643 ATGGCTTTGAACCTTCGCCAGAAGCAAACAGAATGTATAATTCGAATGTTGAATTTAAACCAGCCGGTGAACTCAACTTCGGCCGGGAACGAAGAAGAGGTTTACAAGATCTTGATCTTCGACAGATTTTGCCAGAACATACTATCCCCTTTGATTCACGTCAAGGATCTTCGCAAACATGGGATCACTCTTTATTTTCTCATCGACAAGGATCGAAAACCTGTTCACGATGTGCCCGCCGTCTATTTCGTCCAACCGACTAAGATCAACATAGATAGAATTGTTGCTGATGCTTCTCGTTTTCTCTACGATAGCTTTTACTTAAACTTCTCTTCTTCTATTCCTCGTCCTCTTCTTGAGGATCTCGCATCTGGGACGCTGAATTCAGATTCGGTACAACGAATCTCGAAGGTTCATGACCAGTATTTAGAGTTTGTTACATTGGAAGATAACTTGTTTTCGTTGGCACAGAAGAGTATATATCTCCAATTGAACGATCCCTCTGCTGGAGATCGTGAAATCGAGGAGATTATAGAGAGAATCGTCAGTGGGTTGTTTAGTGTTTTGGCTACGCTTGCTGTAGTGCCTGTCATTCGATGCCAACGAGGAGGGCCGGCGGAAATGGTTGCCTCGGCATTGGATCAGAGGTTGAGAGATCATTTGTTGTCGAAGAACAATTTGTTTACAGAGGGTGGAGGATTTGCTAGCTCCTTCCAGCGTCCGATTTTGTGTCTGTTTGATCGAAATTTTGAGTTATCTGTAGGAATACAGCATGATTTTAGGTACAGACCTTTAGTTCATGATGTTCTAGGATTGAAGTTGAATAGATTGAATGTGCAGGGTGAAAAGGGTGGGATGAAATCATATGAATTAGATTGTTCAGACCCATTTTGGCTGGCAAATGGATCTTTGGAGTTTCCAGAGGTTGCAGTGGAGATTGAGACTCAGTTGAATAAGTATAAAAAGGATGTTGATGAGGTGAATAGAAGAACTGGTGGTACTGATGGAGCTGAGTTTGATGGAACAGATTTGATTGGGAACACAAAGCATTTGATGAATGCAGTGAACTCATTGCCAGAATTGACTGAAAGGAAGCAAGTTATTGATAAGCATACAAACATTGCTACAGTGTTGTTGGGTGAGATCAAGGAGAGGTCACTTGATTCATATGCTAAAAAGGAGAATGACATGATGGCCAGAGGAGGGATTGATCGGAACGAACTCTTGAGTGTACTCAAAGGGAAGGGTACTAAAACAGATAAGCTCCGATTTGCTGTTATATATCTCATCTCTTCTGAAACTTTAAATCCATCTGAAGTTGAAGCTGTGGAAGCTGCTCTGAGGGAATCAGAGGTTGATACTAGTGCATTTCAATATGTCAAGAAGATCAAGTCACTGAATGCTTCATTCTCATCAGCAAATTCAGCTAGCAGAAGCAACATTGTGGATTGGGCTGAAAAACTATATGGACAGTCAATAAGTGCAGTGACTGCTGGTGTTAAAAATCTTTTATCTAGTGATAGGCAGCTTGCACTGACTAGGACGGTAGAGGGGTTGATGGATGGAAGACCGAACCCTGAAATTGATACTTTCCTCACATTTGACCCACGTGCTCCAAAGTCGAGTTCTGGAACAAGTAGTAGCCATTTGAAAGGACCATTTAAGGAAGCCATTGTGTTCATGATTGGAGGGGGTAACTATGTCGAGTACGGGAGCTTGCAAGAACTGTCAATGAATCAGCAGCCAGTCAAGCATATAATATACGGTAGCACTGAAATTCTTACCGGAGTTGAGTTTGTGGAGCAGCTTTCGCATTTGGGGCAGAAGATGGGATTTGGCAATGTGGCTGCTCCTCCTCCTCCTCCTCCAGGTCGTTAA 1878 42.6 MALNLRQKQTECIIRMLNLNQPVNSTSAGNEEEVYKILIFDRFCQNILSPLIHVKDLRKHGITLYFLIDKDRKPVHDVPAVYFVQPTKINIDRIVADASRFLYDSFYLNFSSSIPRPLLEDLASGTLNSDSVQRISKVHDQYLEFVTLEDNLFSLAQKSIYLQLNDPSAGDREIEEIIERIVSGLFSVLATLAVVPVIRCQRGGPAEMVASALDQRLRDHLLSKNNLFTEGGGFASSFQRPILCLFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLNVQGEKGGMKSYELDCSDPFWLANGSLEFPEVAVEIETQLNKYKKDVDEVNRRTGGTDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMARGGIDRNELLSVLKGKGTKTDKLRFAVIYLISSETLNPSEVEAVEAALRESEVDTSAFQYVKKIKSLNASFSSANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSSDRQLALTRTVEGLMDGRPNPEIDTFLTFDPRAPKSSSGTSSSHLKGPFKEAIVFMIGGGNYVEYGSLQELSMNQQPVKHIIYGSTEILTGVEFVEQLSHLGQKMGFGNVAAPPPPPPGR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11008520 11011105 - PI0027881.1 Cmetu10g1643 368506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1643 625 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 13 603 IPR001619 GO:0016192
Cmetu10g1643 625 Coils Coil 310 330 - -
Cmetu10g1643 625 Gene3D - 385 510 - -
Cmetu10g1643 625 Gene3D - 3 137 IPR043154 -
Cmetu10g1643 625 PIRSF VPS45_Sec1 3 613 IPR001619 GO:0016192
Cmetu10g1643 625 Gene3D - 148 606 IPR027482 -
Cmetu10g1643 625 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 259 503 IPR043127 -
Cmetu10g1643 625 Pfam Sec1 family 36 602 IPR001619 GO:0016192
Cmetu10g1643 625 SUPERFAMILY Sec1/munc18-like (SM) proteins 1 609 IPR036045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1643 K19998 - - csv:116403874 1166.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0973 Cmetu-Chr1:4605392 Cmetu10g1643 Cmetu-Chr10:11008520 2.20E-294 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g228 . . . . . . . . . . . Cma20g00720 . Car20g00621 . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00602 . . . . . . . Sed05g3003 . Cmo20g00718 . . Car11g01407 . Cpe16g00345 Cpe05g01342 Bhi10g01246 Tan05g1061 Cmetu10g1643 . . . . . . . . . . . . . . .