Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1844 ATGGCGTCTTCTCCCACTCCCATCTCTCCACTATCTTTTACCAATCCAATATCAACAGCAAGAACCAAACCAAAACCATTACCATTTCCAAACAAAACGCCGTCTTCATTGCCTCCCGCGTTGAACCCCACCCCCAAATCTCCGCCCAAGGAGCTTCACTTCAACCGCGATGGCTCTACTTTTAAAAAACTTCAGGTCGGAGTTAATTTGGTAGCGGAGCTGGTGGGTGTTACGTTGGGACCGAAGGGGAGGAATGTGGTGCTTCAGAATAAATATGGACCGCCCAAGATCGTCAACGATGGTGAAACTGTCCTGAAAGAGATTGAGCTGGAAGACCCCTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCTAAGACGAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGACTGATTGCTGAGGGTATGAAGGTTATTGCATCTGGCATGAATCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAAAGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAGATCACGAAATAACGCACGTGGCCGCAGTTAGCGCAGGGAATGATTATGCTGTGGGAAATTTGGTTTCAGATGCCTTACGTCAAGTTGGATGGAAGGGAGTCGTTCAAATTGAGAAAGGGAAGAGTATCGATAACAGTTTGCAAATTGTTGAAGGGATGCAATTTGATCGTGGATATTTATCCCCATACTTCGTGACTGACAGAAGGAAGATGGTAGTAGAGTTCCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATTTCAGATCCGAAGGAGATGTTTAAAATATTGGACAGTGCGGTGAAAGAGAAATACCCAATTGTGATATTGGCAGAGGGCATTGAGCAGGAAGCTCTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTATTTAGATGACATAGCCACCTTAACTGGAGCTACGGTGGTCAGAGAAGATAGTGGATTGACGTTAGAAAAGGCCGGCAAAGAGGTATTGGGCTCCGCTTGTAAGGTTGTTATATCAAAAGATTCCACACTAATAGTTACAGATGGGAATACTCGGGAAGCTGTTCAGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGAACACTGAGGAAAATTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGGCGAATTGCAATAATTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATCGAGGATGCTTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACGAAGGTGGATGCTATAAAAAGTGTCCTGGAAAATGACGAACAGATGATTGGAGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAGTGTTGTTATAGATAAGGTCGCTGTGCACAAAGGAACTTGCATCTAA 1581 44.09 MASSPTPISPLSFTNPISTARTKPKPLPFPNKTPSSLPPALNPTPKSPPKELHFNRDGSTFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVIASGMNPVQIARGIEKTAKALVSELKLMSREVEDHEITHVAAVSAGNDYAVGNLVSDALRQVGWKGVVQIEKGKSIDNSLQIVEGMQFDRGYLSPYFVTDRRKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDSGLTLEKAGKEVLGSACKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLSGRIAIIQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKSVLENDEQMIGAEIFKRALSYPTKLIARNAGVNGSVVIDKVAVHKGTCI 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19909201 19914419 - PI0022228.1 Cmetu10g1844 368707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1844 526 Gene3D GroEL 239 420 IPR027409 -
Cmetu10g1844 526 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 46 519 IPR001844 GO:0042026|GO:0140662
Cmetu10g1844 526 SUPERFAMILY GroEL equatorial domain-like 424 519 IPR027413 -
Cmetu10g1844 526 SUPERFAMILY GroEL equatorial domain-like 57 276 IPR027413 -
Cmetu10g1844 526 Pfam TCP-1/cpn60 chaperonin family 71 519 IPR002423 GO:0005524
Cmetu10g1844 526 SUPERFAMILY GroEL apical domain-like 232 423 IPR027409 -
Cmetu10g1844 526 Coils Coil 386 406 - -
Cmetu10g1844 526 MobiDBLite consensus disorder prediction 1 51 - -
Cmetu10g1844 526 FunFam 60 kDa chaperonin 239 420 - -
Cmetu10g1844 526 PRINTS 60kDa chaperonin signature 315 338 IPR001844 GO:0042026|GO:0140662
Cmetu10g1844 526 PRINTS 60kDa chaperonin signature 75 101 IPR001844 GO:0042026|GO:0140662
Cmetu10g1844 526 PRINTS 60kDa chaperonin signature 445 466 IPR001844 GO:0042026|GO:0140662
Cmetu10g1844 526 PRINTS 60kDa chaperonin signature 131 158 IPR001844 GO:0042026|GO:0140662
Cmetu10g1844 526 PRINTS 60kDa chaperonin signature 397 422 IPR001844 GO:0042026|GO:0140662
Cmetu10g1844 526 MobiDBLite consensus disorder prediction 1 21 - -
Cmetu10g1844 526 Gene3D - 62 522 IPR027413 -
Cmetu10g1844 526 MobiDBLite consensus disorder prediction 27 46 - -
Cmetu10g1844 526 ProSitePatterns Chaperonins cpn60 signature. 452 463 IPR018370 GO:0005524|GO:0006457
Cmetu10g1844 526 CDD GroEL 50 523 IPR001844 GO:0042026|GO:0140662
Cmetu10g1844 526 Gene3D - 185 457 IPR027410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1844 K04077 - - csv:101209342 946.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1328 Cmetu-Chr2:3032630 Cmetu10g1844 Cmetu-Chr10:19909201 8.00E-188 dispersed
Cmetu10g1844 Cmetu-Chr10:19909201 Cmetu11g2156 Cmetu-Chr11:5603251 3.80E-122 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67