Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0030 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATCCACTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGACGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGCGCCTTCACATCAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCCGACAAGCAGAAAGAGCAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTTTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGATTGAGATGGTTGACGATGAAGAGTTTTTTACGGTTCCTGATCTTGGATGA 714 45.8 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKAPSHQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGNAIACRPTKSSTSYKKPRIEMVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 711908 715587 - PI0006610.2 Cmetu11g0030 368762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0030 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmetu11g0030 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cmetu11g0030 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmetu11g0030 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cmetu11g0030 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cmetu11g0030 237 MobiDBLite consensus disorder prediction 204 218 - -
Cmetu11g0030 237 CDD Bbox1_BBX-like 5 47 - -
Cmetu11g0030 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cmetu11g0030 237 Gene3D Classic Zinc Finger 1 93 - -
Cmetu11g0030 237 MobiDBLite consensus disorder prediction 199 219 - -
Cmetu11g0030 237 CDD Bbox1_BBX-like 56 98 - -
Cmetu11g0030 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0030 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1194 Cmetu-Chr3:2172675 Cmetu11g0030 Cmetu-Chr11:711908 1.50E-31 dispersed
Cmetu04g0320 Cmetu-Chr4:3868095 Cmetu11g0030 Cmetu-Chr11:711908 3.90E-20 dispersed
Cmetu07g0164 Cmetu-Chr7:7564605 Cmetu11g0030 Cmetu-Chr11:711908 1.20E-35 dispersed
Cmetu07g2202 Cmetu-Chr7:15818838 Cmetu11g0030 Cmetu-Chr11:711908 3.20E-08 dispersed
Cmetu11g0030 Cmetu-Chr11:711908 Cmetu11g0516 Cmetu-Chr11:27843886 2.00E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g0207 . 1 376 Orphan Transcription Factor Family AT5G61850 69.6 2.4e-122 436.0
Cmetu11g0030 . 1 167 Orphan Transcription Factor Family AT1G06040 67.2 3.2e-60 228.4
Cmetu07g0164 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8688 PF00643 zf-B_box 5.20E-08 No_clan Cmetu TF