Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0032 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCAGCCCCTTCTTCTTCGTCTTCTGGTCCCACTACCCGTTCTACCAAGCGCGCTCGTCTTTCTGCTACTTCTTCATCGAATCTTGCTGCTGCAACTACTCTTTCGATCTCTACACGTTCTCGCTCTACTCGAACCCAAGAACCTTCTGCCACTACTACTCCAATGGACTCGACTAATGAATCATCTGGGTCACGCCGACGTGGGAAGAATTCTGATAAAGAGAACTCGGATAAGGGGAAGGAGAAGGAACATGAGGTTAGGATTGGGGATAGAGAAAGAAATGCTGACCAGAGCTTTGGGTTGAATATTGAAGGGAGTGGCGGTGGGGAGGATGATGATAATGACAGTGAAGGAGGAATGGGAGTCTTGCAGCAGAATTTATCCACTGCTAGTAGTGCCCTTCAAGGACTTCTCAGGAAACTAGGTGCTGGATTGGATGATTTACTTCCATCTTCTGCAATTGCATCGGCTTCATCCTCACAGCAGAGAGGACGGCTTAAGAAAATCTTATCTGGGTTGAGAGCGGATGGAGAAGAAGGGAAGCAGGTCGAGGCATTGACACAACTCTGTGAGATGCTTTCAATCGGGACTGAGGAGTCTCTAAGTACTTTCTCTGTTGATTCTTTTGTCCCTGTCCTTGTTGGGTTGCTTAATCACGAAAGCAATCCTGATATAATGCTTCTAGCGGCTAGGGCACTAACCCATCTGTGTGATGTTCTCCCTTCATCATGTGCTGCTGTTGTGCACTATGGTGCTGTTCCTTGCTTCTGTGCGAGATTGCTGACTATAGAATACATGGACCTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCTACTGCTTGCCTGCGGGCTGGTGCTCTCATGGCTGTGCTTTCATACTTAGATTTCTTCTCTACAGGAGTTCAGCGAGTTGCATTGTCCACTGCTGCTAATATGTGCAAGAAGCTTCCTTCAGATGCAGCCGACTTTGTGATGGAAGCTGTTCCCCTGCTGACAAACCTTCTTCAGTATCATGATGCAAAAGTGTTGGAGCACGCTTCAGTTTGTTTGACTCGTATTGCGGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTATGTAACCATGGACTTGTTACGCAAGCTTCCTCACTTATTTCCACCAGCAGTACTGGAGGTGGACAGTCAACTCTTGGATCAGCTACTTACACCGGATTAATCCGACTTCTTTCCACATGTGCAAGTGGATCTGCCTTAGGTGCAAAAACTTTGCTGCTTCTTGGGATCAGTGGCATTCTTAAAGATATATTATCTGGTTCTGGCGTGTCTACTAATGCATCTGTTTCGCCTGCATTAAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCTCCTCTACCTCAAGGAACTATTTCCTTTCCACCCAACTTTAATCTGTTTGTGAAAGGACCAGTCATCAAGAAGCCATCTACTAGCGGTTCTGCGAAAGAAGAAGATCCATCTGATAGTGCTCCAGAAGTGTCAGCTCGTGAGAAGCTCTTAAAGGATCAGCCTGAGCTCCTCCTTCAGTTTGGAATGGATCTCCTTCCTATTTTAATACAGATCTATGGTTCCAGTGTGAATGGTCCAGTACGTCATAAATGTCTCTCTGGAATTGGAAAATTGATGTACTTCAGCACTCCAGAGATGATACAATCATTATTGAATGTGACTAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCGTGGAAAGATCCACATATTTTGATTCCTGCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCACGAAACATTTTCTAAGATGTTCCTACGGGAGGGCGTTGTTTATGCTGTTGACCAGCTTATCTTGGCTAATAACCAAAATACTTCTTCCCAAGCGGGTTCTGTTGAGAAGGATAGCACCTCTGCGTCTGGAACTTCATCACGCACTCGACGTTATAGGCGGCGTAGTGGAAATATGAATCCGGATGGAAGTTCACTGGACGAAAACAAGAATTCTGTTTCTGGAAGTGGTGTTCCACAGGGTTCAGTGGAGGTTCCATCAATTAATTCTAATCTCCGATCTTCTGTAAGTTCCTGTGCCAACGCATTTAAAACTAAGTATTTCCCCTTAGATCCGGGAGATGTTGAAGTTGGAGTTACAGATGATCTCTTACGTCTGAAGAATCTTTGTTTCAAGTTGAATGCTGGTATTGATGATCAGAAGAGTAAATCGAAAGGAAAGTTGAAAGCGTCAGGGTCCCGCCTAGATGATATTATTACAAATAAGGAAGATTATTTAACTGGTGTGATATCTGAAATGCTAGTTGAATTGGGCAAAGATGATGGTGTTTCCACTTTTGAATTTATTGGTAGTGGTGTTGTTGGAGTTCTGCTTAACTACTTTTCATGCGGATACTTTTCTAAAGGAAGAATTTCGGAAGTTGAGTTGCCAAAGCTTCGGCAACAAGTGCTTAAAAGATTTAAATCGTTTATTTCTGTTGCCCTACCTGCTAGCATTAATGAAGGAACAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTGCAGAGTGCTTTATCATCGCTGGAGCGTTTTCCAGTTGTCCTGAGCCATTCTTCTAGATCATCCAGTGGTAGTGCCCGGCTTTCTTCTGGGCTTAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCTCAGGGAGAAAAATCACTTCGTGATTATTCATCAAATATTGTTCTGATCGATCCATTGGCAAGTTTAGCAGCTGTTGAAGAGTTTCTGTGGCCTAGAGTTCAGAAAAGCGAATCTGGTCAGAAACCTTCAGCATCTGGTGCAAACTCAGATTCAGGAACTACGCCTTCAGGAAACGTTGCTCCATCAGGGTTAAATTCAACCCCGAGTTCAACCGCTCGTCGTTACTCTACTAGGTCTAGATCATCGATGACTATTGGAGAAAGAGCAGGGAAGGAATCTTCACAGGAGAAAAGCACATCAAAGGGGAAGGGGAAAGCTATTCTAAAGCCTGCCTGGGAGGAGAAGAGAGGCCTGCAAACTAGAAGTTCTACTCGTAGAAGAGCAGCTGTGGACAAGGATGCCCAAATGAAGCCTGTAAATGGAGAGACTACATCTGAGGATGAAGAATTGGACCTATCCTCTATTCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGATCACGATGATGTGCTGCAGGATGACTCTCTTCCTCTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGCGACACAGTTGAAGAAGGGGATGCTGGTCCAGCTACAAGTGATGGTCAGATTCATTCCACTTTTGGCTCTAGCAGCAGAGCTGCTACAGTCAGGGGTTCTAATTCTCCTGATCATAGGAGTGGAAATTCTTTTAGTTCGAGGGGAGGTATGTCATTTGCTGCTGCTGCTATGGCTGGGCTTGGACCAGCTAATGGCAGAGGTTTTCGTGGAGGTCGGGATCCACAGGGACGCCCTCTTTTTGGTGGCTCCAATGACAACCCAAAATTACTTTTTCTTCTGCTTGTTTTGAATGAAGATGATGATGAGAGGTTTGCTGGTGCTGGAAGTGATTTCTTGTCTAATGATGGGAGCAGTTTATGGGGTGATATATATACTATCACATATCAGAGGGCAGATAATCAATCTGAAAGAGCTGCTTTAGCTGGGGAATCAAGCTCTTCAAAATCTAAATCTACCAAATGTGTATCGACTTCCAATTCAAATTCAGAGTCTCAATTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTTGACAAATCCAATCCTACATATGATATACTATCTTTATTGCGGGTACTTGAGGGATTGAATCAGCTTGCTCCACGCTTAAGGGCACAAATTGTGTCAGATCAATTTGCAGAGGGAAAGATCACTGCGCTTGATGAATTGGGTGGAGTTGGTGGAAAGGTTCCTCATGAGGAATTTATCAACAACAAGCTTACTCCCAAGTTGGCTCGACAAATTCAGGATGCTCTTGCACTATGCAGTGGGAGTCTTCCCTCATGGTGCTACCAATTGACTAAGGCATGTCCGTTCTTATTTCCTTTTGAGACCCGCCGGCAATATTTCTATTCAACTGCATTTGGGCTGTCACGTGCATTATATCGGCTACATCAGCAGCAAGGAGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGCCAGAAGGTTCGTGTCTCCCGTAATCGTATATTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCCAGCCAGAAGGCTGTTCTTGAAGTTGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCGACCCTTGAATTCTACACACTTCTAAGTCATGAACTGCAGAGGGCTGGACTTGGAATGTGGAGGTCTAATTCATTGCAAGAGTCAACAGATAGTGGTGAGGATGGACAAGTTAGGAAGGCTAAAGGTGGCTCTAGGCTTACTTCTGATGCAGCCAATATTGATATTATTCAATCACCTCTTGGGTTGTTTCCTCGACCTTGGCCACCAAATGCTGATTCTTCTGATGGCAGCCAATTGTCAAAGGTTATTGAATATTTCCGGCTTGTTGGTCGTGTGATGGCCAAAGCTCTACAAGATGGAAGACTATTGGATCTACCGCTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGATATCCTCTCATTTGATGCTGAGCTTGGGAAGACTTTACAAGAATTGCAGGCTCTTGTTTGCCGGAAGCAGTATTTAGGATCGATAAATGGTGATAATCAAAATACAATTTCCAACTTGACCTTCCGTGAGATTCCAGTTGAAGACCTCTGCTTGGATTTTACAGTTCCTGGTTATCCAGACTACGTGTTGAGACCAGGAGATGAAACTGTTAATATTCATAACTTGGAGGAGTACATATCCTTAGTATTAGATGCGACTGTCAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTGCAGGATTCAATCAGGTTTTTGACATCACAGCATTACGCATATTCATTCCCCATGAATTAGACCATTTGCTATGTGGCCGTAGAGAATTGTGGAAGGTTGACACACTTGTGGATCATATTAAATTCGATCATGGATACACAGCCAAGAGTCCTGCAATAGTCAATTTTCTTGAGATTATGGGAGAATTCACACCGGAGCAGCAGCGAGCATTCTGCCAGTTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTTGCAGTGTTGAACCCAAGATTGACTATTGTGAGAAAGCACTCATCAACTGCAACAAATGCAGCAAACAGTGCGACAGGGGCTTCTGAATCAGCAGATGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCGTACTCGACCAAGGAAATAATGTACAAGAAACTAATCTATGCAATCAATGAGGGGCAGGGATCGTTTGATTTGTCATGA 5625 43.79 METRSRKRAEASSAAPSSSSSGPTTRSTKRARLSATSSSNLAAATTLSISTRSRSTRTQEPSATTTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNADQSFGLNIEGSGGGEDDDNDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVPCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQASSLISTSSTGGGQSTLGSATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNASVSPALNRPQEQIFEIVNLANELLPPLPQGTISFPPNFNLFVKGPVIKKPSTSGSAKEEDPSDSAPEVSAREKLLKDQPELLLQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPALQIAEILMEKLHETFSKMFLREGVVYAVDQLILANNQNTSSQAGSVEKDSTSASGTSSRTRRYRRRSGNMNPDGSSLDENKNSVSGSGVPQGSVEVPSINSNLRSSVSSCANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCFKLNAGIDDQKSKSKGKLKASGSRLDDIITNKEDYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRISEVELPKLRQQVLKRFKSFISVALPASINEGTVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSSGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQKSESGQKPSASGANSDSGTTPSGNVAPSGLNSTPSSTARRYSTRSRSSMTIGERAGKESSQEKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPVNGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDTVEEGDAGPATSDGQIHSTFGSSSRAATVRGSNSPDHRSGNSFSSRGGMSFAAAAMAGLGPANGRGFRGGRDPQGRPLFGGSNDNPKLLFLLLVLNEDDDERFAGAGSDFLSNDGSSLWGDIYTITYQRADNQSERAALAGESSSSKSKSTKCVSTSNSNSESQFHQMSLLDSILQGKLPCDFDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDQFAEGKITALDELGGVGGKVPHEEFINNKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQQGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESTDSGEDGQVRKAKGGSRLTSDAANIDIIQSPLGLFPRPWPPNADSSDGSQLSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLHDILSFDAELGKTLQELQALVCRKQYLGSINGDNQNTISNLTFREIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTAGFNQVFDITALRIFIPHELDHLLCGRRELWKVDTLVDHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTATNAANSATGASESADDDLPSVMTCANYLKLPPYSTKEIMYKKLIYAINEGQGSFDLS 1874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28581892 28591686 + PI0010703.1 Cmetu11g0032 368764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0032 1874 Gene3D Hect, E3 ligase catalytic domain 1745 1872 - -
Cmetu11g0032 1874 Gene3D Hect, E3 ligase catalytic domains 1390 1636 - -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 1514 1536 - -
Cmetu11g0032 1874 Gene3D - 180 660 IPR011989 -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 1123 1168 - -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 651 670 - -
Cmetu11g0032 1874 SUPERFAMILY ARM repeat 79 655 IPR016024 -
Cmetu11g0032 1874 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1743 1873 - -
Cmetu11g0032 1874 FunFam E3 ubiquitin-protein ligase UPL3 1391 1635 - -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 651 710 - -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 10 74 - -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 681 710 - -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 1258 1282 - -
Cmetu11g0032 1874 SMART arm_5 210 251 IPR000225 GO:0005515
Cmetu11g0032 1874 SMART arm_5 253 294 IPR000225 GO:0005515
Cmetu11g0032 1874 SMART arm_5 336 374 IPR000225 GO:0005515
Cmetu11g0032 1874 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1874 IPR045322 GO:0006511|GO:0061630
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 75 107 - -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 958 1011 - -
Cmetu11g0032 1874 Pfam HECT-domain (ubiquitin-transferase) 1498 1874 IPR000569 GO:0004842
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 1 135 - -
Cmetu11g0032 1874 SUPERFAMILY Hect, E3 ligase catalytic domain 1442 1867 IPR035983 GO:0004842
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 1012 1055 - -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 1134 1168 - -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 1067 1102 - -
Cmetu11g0032 1874 CDD HECTc 1450 1869 IPR000569 GO:0004842
Cmetu11g0032 1874 SMART hect_3 1461 1874 IPR000569 GO:0004842
Cmetu11g0032 1874 Coils Coil 1873 1874 - -
Cmetu11g0032 1874 ProSiteProfiles HECT domain profile. 1474 1874 IPR000569 GO:0004842
Cmetu11g0032 1874 FunFam HECT ubiquitin protein ligase family protein KAK 172 486 - -
Cmetu11g0032 1874 MobiDBLite consensus disorder prediction 957 1110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0032 K10590 - - csv:101218793 3293.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0710 Cmetu-Chr4:4033360 Cmetu11g0032 Cmetu-Chr11:28581892 1.00E-268 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
Vvi4g1154 . . . . . . . . . Cmo20g01136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0197 . . . Cma20g01106 . . Cpe05g01103 . Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48