Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0118 ATGGCCGCTGATCCTTTGACAAGCTCTAATGGCATTGCCAATGTCAATTCACTACCTGATCCGCGGAGGACTTATCAAGTTGTTGTAGCTGCTACTGAAAATTTGGGCATCGGTAAGGATGGAAAATTACCATGGAGGTTGCCTTCTGATCTCAAATTTTTTAAAAACATAACCACAACAACATCAGATCCTGGGAAAAGGAATGCAATTCTAATGGGTCGTAAAACATGGGAGAGTCTTCCTGCTGAGCATCGACCACTACCTGGTCGTCTGAATGTTGTTCTGACTCGTTCCGGAAGTTTTGACATTGCAACTGTTGAAAATGTTATAATATGTGGTAGTATAACGTCTGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGTGGTGGTGAGATATTAAGGGATGCTATGAATGCCCCTGAATGTGATGCTGTCCACATTACTGAAATTGAGACAAATGTTGAATGTGACACCTTCATACCAGCTGTTGATAAGTCGATGTTTCAACCATGGTATTCATCTTTTCCTGTGAACAATGGTTTGGTCTCTCATAACAAGCCTGATTTTTCTAACTTTGAAGCTAAAAAGTTCTCTTTCCTACCTAAGGAGATTTTTGAGAGGCATGAGGAGTACTTGTACCTAAAACTTGTTCAAGAAATCATCTCAAATGGTATTCCTAAAGATGATAGAACAGGAACAGGTACTTTGTCAAAATTGATGCGTTACAACTTGCGCAAAACTTTTCCACTGCTTACAACTAAGAAAGTATTTTGGCGAGGGGTGGTTGAAGAACTTCTTTGGTTCATTAGTGGTTCAACCAATGCAAAGGTTCTTCAGGAGAAAGGCATTCATATATGGGATGGCAACGCATCCAGAGATTACCTCGATAGTATTGGTTTAAGAGAAAGGGAGGAAGGCGACTTGGGACCTGTATATGGGTTCCAGTGGCGACACTTTGGTGCTAGGTATACGGACATGCATGCTGACTATACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAAAATAATCCTGATGACCGGAGGATCATTCTTTCTGCATGGAATCCATCTGATCTCAAACTGATGGCACTTCCTCCTTGCCACATGTTCGCTCAGTTTTATGTTGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGTTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCATCATACGCTCTTCTGACTTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGCGACTTCATACATGTGATTGGAGATGCTCATGTTTACCGTACTCATGTGAGGCCATTGCAGGAACAACTTCAGAAACTCCCCAAACCGTTCCCCATTTTGAAGATAAATTCCGAGAAGAAGGATATTGATTCTTTTGTGGCAGATGATTTTGAACTAACTGGTTATGAGCCTCATGAGAAGATAGCAATGAAAATGGCAGTATAG 1503 40.85 MAADPLTSSNGIANVNSLPDPRRTYQVVVAATENLGIGKDGKLPWRLPSDLKFFKNITTTTSDPGKRNAILMGRKTWESLPAEHRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILRDAMNAPECDAVHITEIETNVECDTFIPAVDKSMFQPWYSSFPVNNGLVSHNKPDFSNFEAKKFSFLPKEIFERHEEYLYLKLVQEIISNGIPKDDRTGTGTLSKLMRYNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLREREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINSEKKDIDSFVADDFELTGYEPHEKIAMKMAV 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27592337 27596764 - PI0002432.1 Cmetu11g0118 368850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0118 500 FunFam Possible thymidylate synthase 214 500 - -
Cmetu11g0118 500 Pfam Dihydrofolate reductase 26 180 IPR001796 GO:0004146|GO:0046654
Cmetu11g0118 500 Gene3D Dihydrofolate Reductase, subunit A 9 198 IPR024072 -
Cmetu11g0118 500 PANTHER THYMIDYLATE SYNTHASE 1 48 500 IPR045097 GO:0016741
Cmetu11g0118 500 CDD DHFR 28 179 IPR001796 GO:0004146|GO:0046654
Cmetu11g0118 500 ProSitePatterns Thymidylate synthase active site. 362 390 IPR020940 GO:0004799|GO:0006231
Cmetu11g0118 500 CDD TS_Pyrimidine_HMase 223 453 IPR023451 -
Cmetu11g0118 500 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 208 500 IPR036926 -
Cmetu11g0118 500 NCBIfam thymidylate synthase 223 500 IPR000398 GO:0004799|GO:0006231
Cmetu11g0118 500 Hamap Thymidylate synthase [thyA]. 220 500 IPR000398 GO:0004799|GO:0006231
Cmetu11g0118 500 Pfam Thymidylate synthase 223 500 IPR023451 -
Cmetu11g0118 500 PIRSF DHFR-TS 9 201 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cmetu11g0118 500 PIRSF DHFR-TS 188 500 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cmetu11g0118 500 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 228 IPR001796 GO:0004146|GO:0046654
Cmetu11g0118 500 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 200 500 IPR036926 -
Cmetu11g0118 500 SUPERFAMILY Dihydrofolate reductase-like 22 190 IPR024072 -
Cmetu11g0118 500 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 36 58 IPR017925 GO:0004146
Cmetu11g0118 500 PRINTS Thymidylate synthase family signature 351 370 IPR000398 GO:0004799|GO:0006231
Cmetu11g0118 500 PRINTS Thymidylate synthase family signature 395 421 IPR000398 GO:0004799|GO:0006231
Cmetu11g0118 500 PRINTS Thymidylate synthase family signature 433 450 IPR000398 GO:0004799|GO:0006231
Cmetu11g0118 500 PRINTS Thymidylate synthase family signature 258 279 IPR000398 GO:0004799|GO:0006231
Cmetu11g0118 500 PRINTS Thymidylate synthase family signature 377 392 IPR000398 GO:0004799|GO:0006231
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0118 K13998 - - csv:101208660 974.156
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43