Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0137 ATGCCTCGAGGATTCTCTTTGTTGTATCAACCACGATGCCTCCTTCTCTTGATTGTCTTTCTAATTTTCCTCGTTTTCGCGCTCTTCACTCACAATCAAAGCGAAGAGAAACAAGAAGAAGAGCTGGAAATTACGCACAGGGTCTTCTTGGATGTTGATATTGAAGAACAGAGATTAGAAAATTTCAGGGCTCTATGCACAGGGGAGAAAGGTAAAACTACAAGTGGAAAAGCACTCCATTATAAAGGAACACCATTCCACCGTATCATATCTGGTTTCGTGATTCAAGGTGGTGATATTTTATATGGTGATGGAAAAGGATATGAATCAATTTATGGTGGTACATTTGCTGATGAGAACTTCAGAGTAAAACATTCACATGCAGGTGTTGTCTCCATGGTAAACTCAGGACCTGATTCAAATGGCTCACATTTTTCATTACCACCATTAAGTCCAGCTGATGATGCGAGCTGTCGTATATGTACACTTTTCAGGTTAGATGGAGAGCACGTCGTCTTTGGCAAGGTTATCCAAGGAATGGACTACGTATATGCAATTGAAGGCGGAGCAGGAACCTATAGCGGGAAACCTAGAAAGAAGGTTACCATTGCTGACAGTGGGGAGATACCCAAGAGCAAGTGGGATGAGGAAGCATGA 657 42.16 MPRGFSLLYQPRCLLLLIVFLIFLVFALFTHNQSEEKQEEELEITHRVFLDVDIEEQRLENFRALCTGEKGKTTSGKALHYKGTPFHRIISGFVIQGGDILYGDGKGYESIYGGTFADENFRVKHSHAGVVSMVNSGPDSNGSHFSLPPLSPADDASCRICTLFRLDGEHVVFGKVIQGMDYVYAIEGGAGTYSGKPRKKVTIADSGEIPKSKWDEEA 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28493540 28496463 + PI0003527.1 Cmetu11g0137 368869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0137 218 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 81 98 IPR020892 GO:0003755|GO:0006457
Cmetu11g0137 218 Gene3D - 33 215 IPR029000 -
Cmetu11g0137 218 SUPERFAMILY Cyclophilin-like 57 209 IPR029000 -
Cmetu11g0137 218 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 98 IPR002130 GO:0000413|GO:0003755
Cmetu11g0137 218 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 168 183 IPR002130 GO:0000413|GO:0003755
Cmetu11g0137 218 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 50 65 IPR002130 GO:0000413|GO:0003755
Cmetu11g0137 218 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 50 208 IPR002130 GO:0000413|GO:0003755
Cmetu11g0137 218 FunFam Peptidyl-prolyl cis-trans isomerase 158 217 - -
Cmetu11g0137 218 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 58 206 IPR002130 GO:0000413|GO:0003755
Cmetu11g0137 218 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 53 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0137 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g0137 Cmetu-Chr11:28493540 Cmetu11g1517 Cmetu-Chr11:1602987 1.50E-32 dispersed
Cmetu11g0137 Cmetu-Chr11:28493540 Cmetu11g1964 Cmetu-Chr11:7249752 1.20E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g142 . Blo15g00374 Bda06g00481 . Bpe07g00720 . Bma05g00416 Bma12g00927 . . Cma02g00244 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00483 . Chy11g00269 . . . . . . . . . Sed01g0205 Cmo02g00246 . . . . . . Cpe05g01381 Bhi10g01864 Tan05g1156 Cmetu11g0137 . Hepe08g0282 . . Cla02g01156 Cam02g1232 Cec02g1241 Cco02g1281 Clacu02g1213 Cmu02g1182 Cre02g1491 . Csa02g01379 . Cme11g00391
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012364 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29