Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmetu11g0158 | ATGGAAACAAAGAAAGTGGCGGTCGTGGGAGCTGGATTAAGTGGACTAATAGCTTGCAAATTAATTTTATCCAAAGGATTAACCCCAATTGTGTTCGAGGCTAAAGACGTGATTGGTGGCCTTTGGAATGACACGATTAAGTCGACGGTATTACAGACGCGTAGACAAATGTTTGAGCTCTCCGATTTTCCTTGGCCGAAATCTGTGACCGAAGAATTCCCAAGGTATGATCAAGTTCTTGATTACCTCAGATCTTACGCCGAACACTTCGGATTGTTTAAGTACATCAAATTCAACACCAAAGTTCTAAGCATCGAATACGAAGGGTTTTCCGATGAGGAGATTGATAGTTGGACTCATTGGAGTGGCTCCGGCAACGCCTTTTCTGAACGGAGTAAATGGAAGCTCAATCTCGTTGACGCTCGAACTAATCTTCCACTCCAGGAGGAGGTGGTGGATTTCGTAGTACTCTGCACAGGAAAATTCGGTGACATTCCAAATATCCCGAAATTTCCTCCCAATGGGGGCCCCAAAGCTTTCAAAAACGGTAAAGTTCTTCATTATATAGAATATGCGGCCTTGGATTTCGACAGTGCTACGAAGCTTGTCAAGGACAAGGAAGTCGCCATCGTCGGTTTTCAAAAGTCTGCTTTGGAGCTTATCAGGGAATGCACCAATTTAATTGGCACTGACAAACCCTGCACTTTGATTTACAAAACTGAGTACTGGAACCCTCCCGATAGTAGTCCATGGGGGATTCATATCGATTATCTTTTTGCAAGCCGATTTGCCGAGCTTCTGATTCATAAACCTGGCGAGGGTTTCCTTCTCTATCTCCTCGCCATGCTTCTTGCCCCAATTAGATGGTTGATCACGAAGTTGGTGGAATTCCACGTGAGGAGGAAGACAAAAATGGACAAATACCAGATGGTGCCGAAACATAGCATTCTACAGGACGTCACTTCATGTAGATACGCAGTATTGCCTGAGAGATTCTATGAAAGAGTGGAGGAAGGAAGTATAGTTTTGAAGAAAGCACCAAGTTTCAGCTTCTGTGAAGAGGGTATCATGATCAAAGGAGAAACCAAACCGATTCGCTCAGATTTGGTCATTTTGGCTACTGGATATAGAGGGGATTTGAAGTATAGAAATATTTTTGCTTCCTCTACATTTCGAGATTACATGAGTTTTGGTGATGCAGCACTTCCCCTGTACAGGCTATGTATTCATCCCAGAATCCCACAAGTAGCCGTAATTGGACTTACAGAAAGCATTTCGAACTTGTACACCTCAGAGATACGGTGTCGATGGTTGGTGGAGTTTCTTGCCGGCACATTCAAGCTACCAAGCATCAAGGAGATGGAGAAGGACATAGAAAACTGGGAGAGGTGTCTAAAGCTTTACTCAGGAGAGTCTTACTGGCGAGGTTGCATTGGCATGTTGCATCATCATTACAATGATCAAATTTGCAAAGACATAGGGTGGAACCCCAGAAGGAAGAAGGGCTTCTTTGCTAACTTGTTTGTCCCTCATGGCCCTAGAGACTATGCCTCCCCTGATAATTGGTAA | 1569 | 44.04 | METKKVAVVGAGLSGLIACKLILSKGLTPIVFEAKDVIGGLWNDTIKSTVLQTRRQMFELSDFPWPKSVTEEFPRYDQVLDYLRSYAEHFGLFKYIKFNTKVLSIEYEGFSDEEIDSWTHWSGSGNAFSERSKWKLNLVDARTNLPLQEEVVDFVVLCTGKFGDIPNIPKFPPNGGPKAFKNGKVLHYIEYAALDFDSATKLVKDKEVAIVGFQKSALELIRECTNLIGTDKPCTLIYKTEYWNPPDSSPWGIHIDYLFASRFAELLIHKPGEGFLLYLLAMLLAPIRWLITKLVEFHVRRKTKMDKYQMVPKHSILQDVTSCRYAVLPERFYERVEEGSIVLKKAPSFSFCEEGIMIKGETKPIRSDLVILATGYRGDLKYRNIFASSTFRDYMSFGDAALPLYRLCIHPRIPQVAVIGLTESISNLYTSEIRCRWLVEFLAGTFKLPSIKEMEKDIENWERCLKLYSGESYWRGCIGMLHHHYNDQICKDIGWNPRRKKGFFANLFVPHGPRDYASPDNW | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 11178483 | 11186783 | + | PI0028207.1 | Cmetu11g0158 | 368890 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmetu11g0158 | 522 | Coils | Coil | 451 | 471 | - | - | |
| Cmetu11g0158 | 522 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 19 | - | - | |
| Cmetu11g0158 | 522 | SUPERFAMILY | FAD/NAD(P)-binding domain | 360 | 516 | IPR036188 | - | |
| Cmetu11g0158 | 522 | FunFam | Flavin-containing monooxygenase | 356 | 508 | - | - | |
| Cmetu11g0158 | 522 | PIRSF | FMO | 2 | 506 | IPR000960 | GO:0050660|GO:0050661 | |
| Cmetu11g0158 | 522 | Gene3D | - | 354 | 501 | IPR036188 | - | |
| Cmetu11g0158 | 522 | Pfam | Flavin-binding monooxygenase-like | 4 | 469 | IPR020946 | GO:0004499|GO:0050660|GO:0050661 | |
| Cmetu11g0158 | 522 | Gene3D | - | 176 | 256 | IPR036188 | - | |
| Cmetu11g0158 | 522 | PANTHER | DIMETHYLANILINE MONOOXYGENASE | 4 | 501 | - | - | |
| Cmetu11g0158 | 522 | Gene3D | - | 2 | 175 | IPR036188 | - | |
| Cmetu11g0158 | 522 | SUPERFAMILY | FAD/NAD(P)-binding domain | 1 | 251 | IPR036188 | - | |
| Cmetu11g0158 | 522 | FunFam | Flavin-containing monooxygenase | 2 | 176 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmetu11g0158 | K00485 | - | - | csv:101210999 | 1040.02 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmetu11g0158 | Cmetu-Chr11:11178483 | Cmetu11g1239 | Cmetu-Chr11:15534607 | 2.50E-222 | dispersed | |
| Cmetu12g0501 | Cmetu-Chr12:604330 | Cmetu11g0158 | Cmetu-Chr11:11178483 | 4.20E-09 | transposed | |
| Cmetu11g0158 | Cmetu-Chr11:11178483 | Cmetu11g1705 | Cmetu-Chr11:16579773 | 3.80E-239 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g235 | . | Blo15g00431 | Bda06g00437 | . | . | . | . | . | . | . | Cma02g00293 | . | Car02g00172 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Sed05g3471 | Cmo02g00287 | . | . | . | . | . | . | . | Bhi10g01237 | Tan05g1065 | Cmetu11g0158 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000621 | 2 | 8 | 2 | 2 | 1 | 4 | 2 | 5 | 5 | 4 | 3 | 5 | 4 | 3 | 4 | 4 | 4 | 1 | 1 | 3 | 4 | 3 | 2 | 4 | 4 | 3 | 1 | 4 | 3 | 7 | 102 |