Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0170 ATGACGGCGAAGAATGAGAAAATTGACAAGGATAAGTTACTGGAGCAGTTTCTGAGAATCGGATTGGATGAGCGCACTGCACGAAACACCGTTGCCAACAACAAGGTTACTTCCAATCTCAATGCTGTTATTCACGAGGCTGGTGTGCTTGATGGATGCAATAGGGCTGTTGGAAATCTCTTATATACTGTTGCGACAAAGTATCCAACAAATGCTCTTGTTCATCGACCAATATTGCTCTCAATTGGAAGCAGCATTTTCATTTTTTCTGCTGCTGGCCAAGAAGATATTAAATTAAATGAACTTGAAGATGCATGTGGTGTTGGTGTAGAAGTTTCCGTTGAAGAAATTAAGCAGACTGTGAGTGAGGTTTTTGAAGAACATAAAAATGAAATTCTGGAGCAACGTTATCGAACAAATGTGGGTGACTTGTTTGGGCAGGTACGGAAGAAGCATCCTTGGGCTGATCCAAAGATTGTCAAGCAATTTATTGACTCCAAATTGTTTGAATTACTCGGTGAAAGGACTGCGGCAGATAATGAAAAAATAGCAAAAAAGAAAAAGGAGAAGCCTGCTAAAGTAGAGGATAAACCTGCTGCTATTGTTTCACCGGAACAACCTCCATCAGAGGAAGATCTTAACCCGTATTTAATATTCCCTCAGCCAGAGGATAATTATAAGGTTCATACTGAAGTATTTTTCAGTAATGGAACTATATTAAGATGTTGCAACACCAAGGAGCTGCTTGAAAAGCACCTAAAAGCAACAGGGGGAAAAGTTTTGACTCGCTTTCCTCCTGAACCAAATGGTTATCTCCATATTGGTCATGCCAAGGCAATGTTTGTTGATTTTGGCCTTGCAAAAGAGCGAGGTGGAGGCTGTTATTTGAGGTATGATGACACAAATCCGGAAGCTGAGAAGAAAGAATATATTGATCATATAGAAGAAATTGTCAGGTGGATGGGATGGGAACCTTTCAAGATTACTTATGCTAGTGATTACTTCCAAGATCTGTATGAATTAGCTGTGGAGCTCATACGTAGAGGCCATGCTTACGTTGATCACCAGACTCCTGACGAAATAAAAGAATATAGAGAGAAAAAGATGAATAGTCCCTGGAGGGATAGGCCTGTAGCTGAGTCATTGAAATTGTTTGAAGAAATGAAGCAAGGTCTGATTGACGAAGGCAAGGCGACTCTTAGGATGAAACAAGATATGCAGAGTGATAATTTTAATATGTATGATCTCATTGCATATCGTATTAAGTTTACTCCTCATCCACATGCTGGAGACAAGTGGTGTATTTATCCAAGTTATGATTATGCACACTGCACTGTGGATTCTCTTGAAAATATAACACATTCGCTGTGCACCTTGGAATTTGAAACACGTCGTGTTTCATACTACTGGTTATTGCATGCACTGGATCTTTACCAACCATATGTGTGGGAATATTCTCGCCTCAATGTTTCTAATAACGTGTTGTCTAAGCGTAAGTTAAATCGACTGGTGACCGAAAAATGGGTTGATGGTTGGGATGATCCTCGCCTACTGACACTTGCTGGTCTTAGGCGCAGAGGTGTGACATCAACAGCCATTAATGCTTTTGTTCGAGGAATTGGAATTACTAGAAGTGACTGTTCTTTGATTCGCTTTGATCGACTTGAATATCACATTAGAGAAGAACTAAATAGAACAGCTGCACGAGCAATGATTGTCTTGCAACCGCTTAAGGTTGTTATTACCAACTTAGAAAATGGATCAATATTGGATCTTGATGCCAAGAAATGGCCTGAAGCTCCAGCAGATGAGGCATCGGCCTTTTATAAGGTTCCCTTTTCCAATATTGTGTACATAGAACAATCAGATTTCCGGTTGAAAGATTCCAAAGATTACTATGGTCTTGCACCTGGAAAGTCTGTCCTTCTGAGATATGCATATCCTATAAAATGTATGGATGTTATCCTCGCGGATGATAACGAAACAGTACTTGAGATTCATGCAGAATATGATGCTTCCAAGAAATCAAAGCCAAAGGGTGTCCTACATTGGGTTGCACAACCTTCTCCAGGAGTTAATCCACTCAATGTGGAAGTTAGATTGTTTGACAAACTATTCCTTTCTGAGAATCCTGCCGAGCTTGATGATTGGCTTGCTGATTTGAACCCACATTCTAAAGTAGTCATCCCAAGTGCATATGCTGTACCAGAACTTAGGAATGCTGTTGTTGGGGACACATTCCAATTTGAAAGGCTTGGGTATTTTGCAGTTGATAAAGACTCGACCTCGGAGAAACTCGTATTCAACCGGACCGTCACACTGAGAGATAGCTATAAGAGCAGCAAGTAA 2349 40.44 MTAKNEKIDKDKLLEQFLRIGLDERTARNTVANNKVTSNLNAVIHEAGVLDGCNRAVGNLLYTVATKYPTNALVHRPILLSIGSSIFIFSAAGQEDIKLNELEDACGVGVEVSVEEIKQTVSEVFEEHKNEILEQRYRTNVGDLFGQVRKKHPWADPKIVKQFIDSKLFELLGERTAADNEKIAKKKKEKPAKVEDKPAAIVSPEQPPSEEDLNPYLIFPQPEDNYKVHTEVFFSNGTILRCCNTKELLEKHLKATGGKVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGGCYLRYDDTNPEAEKKEYIDHIEEIVRWMGWEPFKITYASDYFQDLYELAVELIRRGHAYVDHQTPDEIKEYREKKMNSPWRDRPVAESLKLFEEMKQGLIDEGKATLRMKQDMQSDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCTVDSLENITHSLCTLEFETRRVSYYWLLHALDLYQPYVWEYSRLNVSNNVLSKRKLNRLVTEKWVDGWDDPRLLTLAGLRRRGVTSTAINAFVRGIGITRSDCSLIRFDRLEYHIREELNRTAARAMIVLQPLKVVITNLENGSILDLDAKKWPEAPADEASAFYKVPFSNIVYIEQSDFRLKDSKDYYGLAPGKSVLLRYAYPIKCMDVILADDNETVLEIHAEYDASKKSKPKGVLHWVAQPSPGVNPLNVEVRLFDKLFLSENPAELDDWLADLNPHSKVVIPSAYAVPELRNAVVGDTFQFERLGYFAVDKDSTSEKLVFNRTVTLRDSYKSSK 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27463611 27471791 - PI0014801.1 Cmetu11g0170 368902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0170 782 Gene3D Ribosomal Protein L25; Chain P 571 690 IPR020056 -
Cmetu11g0170 782 Gene3D HUPs 232 570 IPR014729 -
Cmetu11g0170 782 MobiDBLite consensus disorder prediction 182 196 - -
Cmetu11g0170 782 Gene3D - 111 180 IPR042559 -
Cmetu11g0170 782 NCBIfam glutamine--tRNA ligase 260 778 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Cmetu11g0170 782 FunFam Glutamine--tRNA ligase 571 690 - -
Cmetu11g0170 782 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 266 277 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmetu11g0170 782 FunFam Glutamine--tRNA ligase cytoplasmic 9 110 - -
Cmetu11g0170 782 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 567 758 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Cmetu11g0170 782 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 157 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Cmetu11g0170 782 CDD GlnRS_core 259 569 - -
Cmetu11g0170 782 MobiDBLite consensus disorder prediction 182 211 - -
Cmetu11g0170 782 FunFam Glutamine--tRNA ligase cytoplasmic 229 570 - -
Cmetu11g0170 782 SUPERFAMILY Nucleotidylyl transferase 259 573 - -
Cmetu11g0170 782 PRINTS Glutamyl-tRNA synthetase signature 263 275 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cmetu11g0170 782 PRINTS Glutamyl-tRNA synthetase signature 437 447 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cmetu11g0170 782 PRINTS Glutamyl-tRNA synthetase signature 292 305 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cmetu11g0170 782 FunFam Glutamine--tRNA ligase cytoplasmic 691 776 - -
Cmetu11g0170 782 Gene3D - 8 110 IPR042558 -
Cmetu11g0170 782 FunFam Glutamine--tRNA ligase cytoplasmic 112 180 - -
Cmetu11g0170 782 PANTHER GLUTAMINE-TRNA LIGASE 20 779 - -
Cmetu11g0170 782 Pfam tRNA synthetases class I (E and Q), catalytic domain 259 564 IPR020058 GO:0004812|GO:0005524|GO:0043039
Cmetu11g0170 782 SUPERFAMILY Ribosomal protein L25-like 567 777 IPR011035 GO:0006412
Cmetu11g0170 782 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 160 237 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Cmetu11g0170 782 Gene3D Ribosomal Protein L25; Chain P 691 776 IPR020056 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0170 K01886 - - csv:101210547 1508.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1956 Cmetu-Chr2:25702 Cmetu11g0170 Cmetu-Chr11:27463611 4.00E-61 dispersed
Cmetu11g0170 Cmetu-Chr11:27463611 Cmetu11g2383 Cmetu-Chr11:28776447 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g314 . Blo15g00412 Bda06g00451 . Bpe07g00684 . . Bma12g00888 Cmo19g00835 . . . . . Sed05g2139 . Cpe15g00657 Bhi05g01543 Tan02g0541 Cmetu11g0170 . Hepe02g0346 . . Cla02g00327 Cam02g0336 Cec02g0336 Cco02g0340 Clacu02g0327 Cmu02g0325 Cre02g0658 . . . Cone10ag1201 . Csa07g00215 . . . . . . . . . . . . . . Cma19g00816 . Car19g00634 . . . . . . . . . . . . . . . . Lsi11g01310 . Chy01g00566 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002630 2 4 2 3 2 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 2 2 2 3 2 2 2 58