Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0188 ATGGAGAATTCAAAAATTCAAGAGATATTGGAGAAGCAGGTCCTGACGGTGGCCAAGGCTGTGGAGGATAAGATTGATGACGAAATTCAAGCGCTTGATCGTCTCGACCTTGACGATTTGGAGGCTTTGAGGGAGCGAAGACTGCAGCAGATGAAGAAGATGGCGGAGAAGAGGAATCGATGGATCTCTCTTGGCCATGGCGAATACTCTGAGATTCCCGTTGAGAAGGACTTCTTCTCCGTTGTCAAGGCTAGTGATCGCGTGGTGTGCCACTTTTACCGTGAAAATTGGCCCTGCAAGGTTATGGATAAGCACTTGAGTATTTTGGCAAAGCAACATATTGAGACACGTTTTGTAAAAATCAATGCTGAGAAAAGTCCATTTCTGGCTGAGAAGTTGAAGATCGTTGTTCTTCCAACCCTTGCTCTGATCAAGAATGCAAAAGTAGATGACTATGTGGTAGGATTTGATGAGCTCGGTGGAACGGATGAATTCAGCACAGAGGAATTAGAGGATAGATTGGCAAAATGTCAAGTCATCTTCCATGAAGGTGAATCATCCATAAATACTTCAAAATCTAGTGGACAAACCAGGAGGAGTGTACGACAAAGTACGAGATCAGACTCATCGGATTCGGAATAA 642 44.08 MENSKIQEILEKQVLTVAKAVEDKIDDEIQALDRLDLDDLEALRERRLQQMKKMAEKRNRWISLGHGEYSEIPVEKDFFSVVKASDRVVCHFYRENWPCKVMDKHLSILAKQHIETRFVKINAEKSPFLAEKLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEDRLAKCQVIFHEGESSINTSKSSGQTRRSVRQSTRSDSSDSE 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23006415 23010374 - PI0024751.1 Cmetu11g0188 368920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0188 213 Pfam Thioredoxin 75 156 IPR013766 -
Cmetu11g0188 213 SUPERFAMILY Thioredoxin-like 4 178 IPR036249 -
Cmetu11g0188 213 CDD Phd_like_TxnDC9 65 175 - -
Cmetu11g0188 213 PANTHER THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 3 212 - -
Cmetu11g0188 213 Gene3D Glutaredoxin 48 182 - -
Cmetu11g0188 213 MobiDBLite consensus disorder prediction 187 203 - -
Cmetu11g0188 213 MobiDBLite consensus disorder prediction 187 213 - -
Cmetu11g0188 213 Coils Coil 18 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0188 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g2061 Cmetu-Chr3:12259835 Cmetu11g0188 Cmetu-Chr11:23006415 1.10E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1028 . . . Bda10g00145 . . . Bma15g00991 . . Cma03g00722 . Car03g00662 . Sed14g1154 . Cpe10g00634 Bhi03g00923 Tan03g2020 Cmetu11g0188 . Hepe04g1548 . . . . . . . . . . . . . . . . . . Blo06g00141 . . Bpe10g00126 . . . . Cmo03g00749 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005152 1 4 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39