Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0215 ATGGCCATGCCAAGGTGCTTCTTAGACATTACCATAGGCGGAGAGCTTGAAGGAAGAATTGTTGTCGAGCTTTACAACGACGTCGTTCCTAAAACTGCTGAGAATTTCAGGGCGCTTTGCACTGGTGAGAAAGGCATTGCTCCTAACACCGCTCTTCCTCTCCATTTCAAGGGTGTCTGCTTTCATCGTGTAATCAAAGGCTTTATGATTCAAGGTGGGGACATTTCCGCTGGCGATGATGAAAATTTTGAACTGAAACATGAAAGGAAAGGAATGTTGTCTATGGCTAACTCTGGTCCCAACACCAATGGGTCTCAATTTTTCATAACAACAACACGAATGGGAGTAGTTCGTTCAATTGAACATGTTATAACTGGTGAGAATGGTCGTCCAACTCTTGATGTTGTAATTGCGGATTGTGGAGAAATCCCTGAAGGGTCGGATGATGGAGTATCAATTTGTTTAAGGATGTCCTTTGAACTTTCTTGGTGGATGAGCGCTGTGGATTCCATCAAGGCTTTTGGTAATGTACATTTTAAGAAGCAAGATTACAAGATGGCTCTCAGAAAGTACCGGAAGGCTTTGCGATATCTTGACATTTGCTGGGAGAGAGAAGGGATTGATGAAGAAGAGTACGTGTCTGAGGAGACCAAATCGCAGATATTCACAAACAGCTCTGCTTGTAAACTGAAGTTAGGGGATCTAAAGGGAGCATTGTTGGACACTGAATTTGCAATTCGTGAAGGGGTGAACAATGTAAAAGCCATGTTCCGCCAAGGCCAGGCACACATGGCTCTTAATGACATTGATTCTGCAGTTGAAAGCTTTAAAAGGGCATTGGATTTGGAGCCAAATGATGCTGGAATAAAGAAAGAGCTGGCTGCTGCTAAGAAAAAGATTGCTGATAGACGTGATCAAGAGAGGAAAGCATATGGCAAGATGGTTAAAAGTAAGTAA 957 42.95 MAMPRCFLDITIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGIAPNTALPLHFKGVCFHRVIKGFMIQGGDISAGDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRMGVVRSIEHVITGENGRPTLDVVIADCGEIPEGSDDGVSICLRMSFELSWWMSAVDSIKAFGNVHFKKQDYKMALRKYRKALRYLDICWEREGIDEEEYVSEETKSQIFTNSSACKLKLGDLKGALLDTEFAIREGVNNVKAMFRQGQAHMALNDIDSAVESFKRALDLEPNDAGIKKELAAAKKKIADRRDQERKAYGKMVKSK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26769443 26776213 - PI0008802.1 Cmetu11g0215 368947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0215 318 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 113 IPR002130 GO:0000413|GO:0003755
Cmetu11g0215 318 FunFam peptidyl-prolyl cis-trans isomerase D 166 316 - -
Cmetu11g0215 318 Pfam Tetratricopeptide repeat 254 286 IPR013105 -
Cmetu11g0215 318 SUPERFAMILY Cyclophilin-like 2 144 IPR029000 -
Cmetu11g0215 318 ProSiteProfiles TPR repeat profile. 253 286 IPR019734 GO:0005515
Cmetu11g0215 318 Gene3D Tetratricopeptide repeat domain 164 317 IPR011990 GO:0005515
Cmetu11g0215 318 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 136 IPR002130 GO:0000413|GO:0003755
Cmetu11g0215 318 SUPERFAMILY TPR-like 168 309 IPR011990 GO:0005515
Cmetu11g0215 318 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 118 IPR002130 GO:0000413|GO:0003755
Cmetu11g0215 318 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Cmetu11g0215 318 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 106 IPR002130 GO:0000413|GO:0003755
Cmetu11g0215 318 SMART tpr_5 168 201 IPR019734 GO:0005515
Cmetu11g0215 318 SMART tpr_5 253 286 IPR019734 GO:0005515
Cmetu11g0215 318 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Cmetu11g0215 318 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 143 - -
Cmetu11g0215 318 Gene3D - 1 149 IPR029000 -
Cmetu11g0215 318 ProSiteProfiles TPR repeat region circular profile. 253 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0215 K05864 - - csv:101207288 544.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g0215 Cmetu-Chr11:26769443 Cmetu11g1964 Cmetu-Chr11:7249752 1.30E-35 dispersed
Cmetu01g0603 Cmetu-Chr1:294897 Cmetu11g0215 Cmetu-Chr11:26769443 1.20E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g464 . . . . . Bpe12g00062 . . . Cmo11g01347 . Cma20g00888 . Car20g00765 . Cpe04g00267 . Bhi05g01141 . . . Hepe02g0569 . . Cla02g00581 Cam02g0614 Cec02g0613 Cco02g0629 Clacu02g0610 Cmu02g0607 Cre02g0938 . Cone8ag1151 Cone3ag1116 Cone10ag1127 Lsi10g00310 Csa07g00780 Chy11g00439 Cme01g00031 . Blo13g00569 Bda15g00028 . . . . . Sed05g3656 . Cmo20g00895 Cma11g01765 . Car11g01085 . . . Bhi10g02077 Tan05g1396 Cmetu11g0215 . Hepe08g1064 . . Cla09g01711 Cam09g1807 Cec09g1868 Cco09g1961 . . Cre01g0699 Lsi11g01025 Csa02g01199 Chy01g00036 Cme11g00511
Vvi7g920 . . . . . . . Bma15g01111 . . . . . . . . Cpe16g00113 Bhi03g01041 . . . Hepe04g1316 . . . . . . . . . Cone6ag1459 . . . . . . . . . . . . . . . Sed05g3656 . . . . . . . . Bhi10g02077 Tan05g1396 Cmetu11g0215 . Hepe08g1064 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002414 1 5 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 2 6 1 61