Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0225 ATGGCCGATAATCAGAAGCAAGAACTCGACGACGACGACGACTCTCCACCCACCCATCTCCGTATCAATGACTCCGATTCCTCTCGAATGGACCGTCTTCCCCTTACTCCCAAGCAGGAACATCCAGACTCCAACCTCCCTCATGACCTTCTCAATTTCACACCTTCCACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCTGCCACCTGTGCCGCCCGTATATTCCAGTTGACTCGTGAGCTCGGCCACAAGTCCGACGGCGAAACTATCCGCTGGCTTCTCGAGCGGGCCGAGCCCGCCATCATCGCCGCTACTGGTACTGGTACCATTCCCGCCATTGCCATGTCCGTTAACGGGACTCTCAAAATCCCCACCACCACATCCTCTTCTAACCAAGATTCCGCCGATCCTTCCGCCGCTAAGAAACGTCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAATGACGCCCTCTCCGTTTCCATCTCCGCTTCCAACGTCGCCGGTTCCCCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCTTCGAACGCCATAATTCCCGGGGCTGTTTTCATGGTTCCATCAGTGGCATGCTCTTCCACACGTCCACAGTTGTTCTCATTCTCGGCTCCGGCGGCACCGCTTATCAACACCACGGCGCGGCCAATTTCCGCCTTCCCGTCGAAGCCAGACACATCTCACATTCAATCCAGCCCCACCAATCAAAGCTCCAGCACTTCAAGCTCCTCGGCTTCCAAATCTCAATCCGTCATGGCACCGATATCGAGCACCACCGTTCAGACGACCGGAAAAACGACTACGCAGATGCTTAGAGATTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA 948 55.38 MADNQKQELDDDDDSPPTHLRINDSDSSRMDRLPLTPKQEHPDSNLPHDLLNFTPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSISASNVAGSPAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFSAPAAPLINTTARPISAFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSTTVQTTGKTTTQMLRDFSLEIYDKEELQFMSRSSSKH 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 150779 151767 + PI0013087.1 Cmetu11g0225 368957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0225 315 MobiDBLite consensus disorder prediction 144 158 - -
Cmetu11g0225 315 MobiDBLite consensus disorder prediction 1 69 - -
Cmetu11g0225 315 MobiDBLite consensus disorder prediction 131 158 - -
Cmetu11g0225 315 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
Cmetu11g0225 315 MobiDBLite consensus disorder prediction 1 45 - -
Cmetu11g0225 315 MobiDBLite consensus disorder prediction 238 288 - -
Cmetu11g0225 315 MobiDBLite consensus disorder prediction 54 69 - -
Cmetu11g0225 315 Pfam TCP family transcription factor 56 150 IPR017887 -
Cmetu11g0225 315 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 300 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0225 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g1669 Cmetu-Chr10:19329286 Cmetu11g0225 Cmetu-Chr11:150779 5.60E-27 dispersed
Cmetu11g0225 Cmetu-Chr11:150779 Cmetu12g0790 Cmetu-Chr12:402509 4.30E-28 dispersed
Cmetu11g0225 Cmetu-Chr11:150779 Cmetu06g2751 Cmetu-Chr6:6829518 9.90E-49 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1538 . 43 260 TCP Transcription Factor Family AT5G23280 62.2 1.7e-64 243.0
Cmetu10g1064 . 34 256 TCP Transcription Factor Family AT5G23280 59.6 7.6e-60 227.6
Cmetu11g0225 . 56 314 TCP Transcription Factor Family AT2G45680 53.4 5.2e-62 235.3
Cmetu10g1669 . 69 163 TCP Transcription Factor Family AT3G47620 89.7 9.0e-41 165.2
Cmetu12g0790 . 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.3e-39 161.4
Cmetu10g0777 . 35 154 TCP Transcription Factor Family AT3G47620 65.9 1.0e-36 151.8
Cmetu10g0777 . 35 136 TCP Transcription Factor Family AT1G69690 77.9 6.9e-37 151.8
Cmetu06g1199 . 43 296 TCP Transcription Factor Family AT3G27010 54.6 3.6e-59 225.7
Cmetu10g1064 . 4 254 TCP Transcription Factor Family AT5G08330 55.7 1.3e-64 243.4
Cmetu09g1538 . 30 259 TCP Transcription Factor Family AT5G08330 60.6 2.9e-64 242.3
Cmetu10g0777 . 34 268 TCP Transcription Factor Family AT1G35560 50.2 8.8e-43 171.4
Cmetu02g1260 . 40 139 TCP Transcription Factor Family AT5G60970 76.2 2.1e-39 160.2
Cmetu07g0568 . 38 131 TCP Transcription Factor Family AT3G02150 77.1 9.8e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8697 PF03634 TCP 5.30E-30 No_clan Cmetu TF