Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0256 ATGTCTCTCTCCATGAAAGCTGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGCCCAAATGAAATCCATGCGATACTGTGTAACTACAAATATTTCATCATCCACGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGGAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAGCCCAACCTTTGTTCGCCGGTGTTATTGGCTCCTTGATAAGACACTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAGTTCTCCATCCACATCGTTGAACTCAAATTCTGGTTCTGTCTCTAACCCATCAACTCCGTGGCTTTTATCGGAGGAACTTGATTCCAAGGCTACTCATGTTTATTCTGTTGATGAAAATGAATTGTCAGAGCCTAGTGACACTACAACAGTCATGACTCATGAACAGCGGCTTCATGAGATCAACACACTTGAGTGGGATGACCTTCTTGTGAAGGACGAGCCTTTCAAACCTGCCATGCCTAAAGGAGGCAAACTTTCATGCTTTGACCAACAGAACCAAGTCCTAATAAATGCGACCAGCAATTTGGTGGGGGAGATGTCTTCATTTAGTAATCCAGTTGAGTCAACTGGGAGGGCCAACGGCAATATCAGTTTCACCGGAAGTGCCAATATGTTGTTAGGTGGTCAAACAAATTTGAATGTGGAGAAGAGGGAATCCATTGCAATTAATTCTATGGACAATTTGTTAGATGAGAGATTGCAAAGTCAGGACAGCTTTGGGCGATGGATAAATGAAGTTATCGTTGAGTCTCCTGGTTCAGTCATTGATCCTGCTATTGAACCATCCATTTCATCTGTTCACAATTCCTTTCGTGATTCAACATTATATCACAGTCAAACTGTGGCTGTGGAGCAAATTTTTAACATAACTGATGTCTCACCTACATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATTATTGGATATTTTCACAATGACTTTGTACATCTAGCAAATTCCAACTTATTGGTTGTATGTGGTGATAGCAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACCACCACATTCACCTGGACTAGTACATTTATATGTGAGCGTAGATGGCCACAAACCTATTAGTCAAGCTCTGAATTTTGAGTATCGTGCACCAAAGTTAGAAGTGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAAGAGTTTCAAATCCAGATGCGGCTTGCTCATATGTTGTTCTCTACATCCAAGATTCTGAGCATCATGTCAACTAAATTGTTGCCCACTGCCCTGCAGGAGGCTAAGAAGCTTGCTATAAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTCAAAGTCAATTACAGAAAATAGAACTCCATTTCAACAAGCAAGGGAAGGTGTTTTTGAGATCATGCTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGACTGGGCGGGTTTGTCAATAAACTTCCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGAATGGTTGCCGTTCTTTTATCAGCGGGGGCAAAGCCAAACTTGGTCACTGATCCCTCATCAAAGAACCCTCTGGGATGTACAGCTGCAGATCTTGCATCTATGAATGGTTTTGATGGCTTAGCTGCGTATCTTTCTGAAAAGGCTTTGGTATCACACTTCAAAGAGATGAGCTTGGCTGGAAATGTCAGTGGCTCGTTGGATAGTAGTACAATAACTGATGCCTCTGATTGCATCAACGAGGAGCAAATGTATATGAAAGAAACATTAGCAGCTTACCGAACAGCAGCTGATGCAGCAGCACGTATACAAGCTGCATTTCGTGAACATTCTTTAAAGCAAAGATCTGATAGAATTGAATTATCCTCCCCAGAAGCTGAGGCACGTAGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAATTTTGAGACACGAAAAAAAATGGCAGCTGCTGCTCGTATCCAATACAGATTCCGTACTTGGAAGATCCGGAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTACGGAGGCAGTATCGCAAGATTGTTTGGTCAGTAGGAGTACTTGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAAGTTGCACCTGCTGAAGTGGTGGAAAAGAAGGAAAGTGTCGTAGAAGAGGACTTCTACCTTGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTGTTCGTGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAAGAGTATCGCAGGATGAGGTTAACCTATGATGAAGCAGCGTTGGAATATGAAGTACTTTCACATCCTATTTGTGGTAGTGATTAA 2742 41.76 MSLSMKADVQGSLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIHAILCNYKYFIIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDSPTFVRRCYWLLDKTLEHIVLVHYRETQESSPSTSLNSNSGSVSNPSTPWLLSEELDSKATHVYSVDENELSEPSDTTTVMTHEQRLHEINTLEWDDLLVKDEPFKPAMPKGGKLSCFDQQNQVLINATSNLVGEMSSFSNPVESTGRANGNISFTGSANMLLGGQTNLNVEKRESIAINSMDNLLDERLQSQDSFGRWINEVIVESPGSVIDPAIEPSISSVHNSFRDSTLYHSQTVAVEQIFNITDVSPTWAFSTEKTKILIIGYFHNDFVHLANSNLLVVCGDSSVNVDFVQPGVYRCLVPPHSPGLVHLYVSVDGHKPISQALNFEYRAPKLEVPVVASEQIQKWEEFQIQMRLAHMLFSTSKILSIMSTKLLPTALQEAKKLAIKTSDISDSWIYLSKSITENRTPFQQAREGVFEIMLRSRLREWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFDWAGLSINFRDKSGWTALHWAAYYGRERMVAVLLSAGAKPNLVTDPSSKNPLGCTAADLASMNGFDGLAAYLSEKALVSHFKEMSLAGNVSGSLDSSTITDASDCINEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRSDRIELSSPEAEARSIIAAMKIQHAYRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRLKRKGFRGLQVAPAEVVEKKESVVEEDFYLVSQKQAEERVERAVVRVQAMFRSKKAQEEYRRMRLTYDEAALEYEVLSHPICGSD 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3827119 3837329 - PI0002257.1 Cmetu11g0256 368988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0256 913 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Cmetu11g0256 913 Coils Coil 881 901 - -
Cmetu11g0256 913 CDD IPT 368 454 - -
Cmetu11g0256 913 ProSiteProfiles IQ motif profile. 869 897 IPR000048 GO:0005515
Cmetu11g0256 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 28 896 - -
Cmetu11g0256 913 Gene3D - 768 814 - -
Cmetu11g0256 913 Gene3D - 507 667 IPR036770 -
Cmetu11g0256 913 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Cmetu11g0256 913 Pfam Ankyrin repeats (3 copies) 553 633 IPR002110 GO:0005515
Cmetu11g0256 913 SUPERFAMILY E set domains 367 454 IPR014756 -
Cmetu11g0256 913 ProSiteProfiles Ankyrin repeat region circular profile. 604 632 - -
Cmetu11g0256 913 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cmetu11g0256 913 Pfam IQ calmodulin-binding motif 792 811 IPR000048 GO:0005515
Cmetu11g0256 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 817 IPR027417 -
Cmetu11g0256 913 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cmetu11g0256 913 ProSiteProfiles IQ motif profile. 714 743 IPR000048 GO:0005515
Cmetu11g0256 913 SMART iq_5 789 811 IPR000048 GO:0005515
Cmetu11g0256 913 SMART iq_5 867 889 IPR000048 GO:0005515
Cmetu11g0256 913 SMART iq_5 766 788 IPR000048 GO:0005515
Cmetu11g0256 913 ProSiteProfiles IQ motif profile. 767 794 IPR000048 GO:0005515
Cmetu11g0256 913 Pfam IPT/TIG domain 368 453 IPR002909 -
Cmetu11g0256 913 Gene3D Immunoglobulins 361 457 IPR013783 -
Cmetu11g0256 913 SMART ANK_2a 604 633 IPR002110 GO:0005515
Cmetu11g0256 913 SUPERFAMILY Ankyrin repeat 566 666 IPR036770 -
Cmetu11g0256 913 ProSiteProfiles IQ motif profile. 790 814 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0256 K21596 - - csv:101211298 1679.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g0256 Cmetu-Chr11:3827119 Cmetu11g2536 Cmetu-Chr11:1829061 1.00E-101 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g2620 . 9 1075 CAMTA Transcription Factor Family AT5G64220 51.5 4.5e-255 878.2
Cmetu11g2536 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.8 1.3e-254 876.7
Cmetu11g0256 . 34 905 CAMTA Transcription Factor Family AT3G16940 54.6 6.8e-259 890.6
Cmetu11g0256 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.9 8.6e-194 674.5
Cmetu01g2620 . 9 1075 CAMTA Transcription Factor Family AT5G64220 51.5 4.5e-255 878.2
Cmetu11g2536 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.8 1.3e-254 876.7
Cmetu11g0256 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.9 8.6e-194 674.5
Cmetu11g0256 . 34 905 CAMTA Transcription Factor Family AT3G16940 54.6 6.8e-259 890.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8700 PF03859 CG-1 5.40E-45 No_clan Cmetu TF