Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0258 ATGGCTTTCTCATCCTCCTTTGCTCGATCTACCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTTTCGCCGTCCGATTGCCGGAAGGTTTCATTCGGGAGCTCTTTAAAGCTTCAATCTGGTGTTTTTGGAACTACTGTCTCGAGTGGGGCGTCTTCTTTACAGTTGAGGTCATCTAATAATCGAACTGTCCAACCCATCAAAGCGACGGCCACTGAGGCGCCTCCAGCAATTCAAAAAACTCCGAGCAGTGGGAAGACCAAGATTGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTATTGCGAGTTGCAACCTCCAGAGATGATATCGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATACGATTCTAGTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAATGATTCTACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTAAGCAAAAGGGACCCTGCAGATATCCCATGGGGTGATTATGGGGCTGAATACGTCGTTGAGTCCTCTGGAGTTTTCACTACGAAAGAGAAGGCTTCAGCACATTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTTTCCAATGCAAGTTGTACTACCAATTGTCTTGCTCCTCTCGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACAGTGCATGCAACGACAGCAACACAAAAGACTGTTGATGGCCCTTCAATGAAGGATTGGAGAGGAGGCCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGGAAAGTTCTTCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCTAATGTATCTGTTGTGGACTTAACTTGCCGACTTGAAAAGAGTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCGAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTACCTCATTCATGAAGCTGGTGACTTGGTACGACAATGAATGGGGATACAGCACCCGAGTACTGGACCTTATCGAGCACATGGCAATGGTTTCGGCCTTGAACTAA 1275 44.55 MAFSSSFARSTVSSSLIEASRSDFSPSDCRKVSFGSSLKLQSGVFGTTVSSGASSLQLRSSNNRTVQPIKATATEAPPAIQKTPSSGKTKIGINGFGRIGRLVLRVATSRDDIDVVAVNDPFVDAKYMAYMFKYDSSHGVFNGTIKVLNDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSTSFMKLVTWYDNEWGYSTRVLDLIEHMAMVSALN 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8567114 8572093 - PI0026640.1 Cmetu11g0258 368990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0258 424 FunFam Glyceraldehyde-3-phosphate dehydrogenase 89 248 - -
Cmetu11g0258 424 Gene3D - 90 417 - -
Cmetu11g0258 424 SMART gp_dh_n_7 89 238 IPR020828 GO:0051287
Cmetu11g0258 424 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 90 412 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cmetu11g0258 424 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 88 418 IPR020831 GO:0016620
Cmetu11g0258 424 Gene3D Dihydrodipicolinate Reductase; domain 2 238 404 - -
Cmetu11g0258 424 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 90 191 IPR020828 GO:0051287
Cmetu11g0258 424 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 236 243 IPR020830 GO:0016620
Cmetu11g0258 424 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 356 371 IPR020831 GO:0016620
Cmetu11g0258 424 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 250 IPR020831 GO:0016620
Cmetu11g0258 424 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 259 275 IPR020831 GO:0016620
Cmetu11g0258 424 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 316 333 IPR020831 GO:0016620
Cmetu11g0258 424 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 197 210 IPR020831 GO:0016620
Cmetu11g0258 424 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 243 400 IPR020829 GO:0016620
Cmetu11g0258 424 FunFam Glyceraldehyde-3-phosphate dehydrogenase 237 402 - -
Cmetu11g0258 424 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 237 400 - -
Cmetu11g0258 424 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 258 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0258 K00134 - - csv:101203472 801.201
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g0258 Cmetu-Chr11:8567114 Cmetu12g0879 Cmetu-Chr12:2983481 7.90E-142 dispersed
Cmetu03g0955 Cmetu-Chr3:25296660 Cmetu11g0258 Cmetu-Chr11:8567114 7.40E-143 transposed
Cmetu06g0951 Cmetu-Chr6:18225796 Cmetu11g0258 Cmetu-Chr11:8567114 1.60E-83 transposed
Cmetu07g0789 Cmetu-Chr7:24561098 Cmetu11g0258 Cmetu-Chr11:8567114 5.70E-90 transposed
Cmetu01g2342 Cmetu-Chr1:7201347 Cmetu11g0258 Cmetu-Chr11:8567114 1.30E-192 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61