Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0294 ATGGCGAAACCCTCGAAGCGACAGGCGTCTTCCGATGAAGCCATGTCCAATGGCTCGAGCTCGTCGGAGGAAGAGGAGCAAACTAACGACCAGATCAATGAGGAGGAAGACGAGGAGGAGCTCGAAGCGGTCGCTCGCTCGGCAGGCTCTGACGAGGATGAAGCTGCCGACGATTCTGATAACGATGGATCACCTGCCGAAAATGGCGAGGAAGAGGATGGAAGTAACGACGGTCAAGATGATAAAACTGATATTGGGCGGCGTGAAAAGGCCAGACTAAGAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGATATGTTAGATGCACAAAATGCTGCTATTGATGCTGATATGAATAACAAGGGGAAGGGACGCTTGAAGTATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCTAAAGGCGATCATTCTTCTTCCCAGAAGAAAACGAAGGGAAGGGGCCGCCATGCATCGAAACTAACTGAAGAAGAAGAAGATGAAGAATATCTTAAAGAGGAAGAAGATGGTCTATCTGGGACTGGGAACACTCGTTTACTTTCACAACCATCTTGTATCCAAGGGAAAATGAGAGATTATCAACTAGCTGGATTAAACTGGCTGATTCGGCTATATGAGAATGGCATAAATGGAATCCTTGCTGATGAGATGGGGCTTGGCAAGACATTACAAACCATCTCCTTGTTGGGCTATCTACACGAGTACAGAGGCATAACAGGCCCCCATATGGTAGTTGCTCCAAAATCTACTCTGGGAAATTGGATGAATGAAATTCGTCGATTTTGCCCTGTCTTGCGTGCTGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGGATATACGGGAAAATTTACTCGTTGCTGGGAAATTTGATGTCTGTGTTACCAGTTTCGAAATGGCCATTAAGGAGAAGTCTTGCTTGCGCCGTTTTAGTTGGCGCTACATTATCATCGATGAAGCCCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAACACCAACTACCGTCTTCTAATCACTGGCACACCACTTCAGAACAATCTTCATGAACTGTGGTCTCTTCTCAATTTCCTTTTGCCTGAAATATTTAGTTCAGCCGAAACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTGGTACAACAACTTCACAAGGTCCTTCGGCCATTTCTTCTTCGGAGGTTGAAATCAGATGTAGAGAAAGGTTTACCTCCAAAAAAGGAAACAATACTTAAAAAGGATCTTGAAGTTGTTAATGCCGGTGGTGAGCGTAAACGGCTACTTAATATTGCAATGCAGCTCCGGAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGACCTCCTTACACCACAGGGGACCATCTTATTACTAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCTAAACTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGGCTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTACTGTCGAATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCCTTCAACAGGCCAGGAAGTGAAAAATTTGTCTTCTTATTATCAACCAGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCAGATGTAGTTATTCTTTATGACAGTGACTGGAACCCTCAAGTTGATCTGCAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAGGAAGTTCAAGTGTTTCGGTTTTGCACTGAGTATACCATTGAGGAAAAAGTGATAGAAAGGGCGTACAAGAAACTTGCCCTCGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGATTTGGTGCTGAGATGGTTTTCAGTTCAAAAGATAGCACCATCACAGATGAGGACATTGACAGAATCATTGCGAAGGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACTGAAGATGCCATTAAATTTAAAATGGATGAAACTGCTGAATTGTATGATTTTGATGATGAAAAGGATGAGAATAAATTTGACTTCAAGAAAATTGTCAGTGAAAATTGGATCGAACCACCTAAAAGAGAACGGAAGCGAAATTACTCAGAATCAGAATACTTTAAGCAAACGATGCGGCAGGGTGGTCCAACAAAACCAAAAGAGCCCAGGATACCTCGCATGCCTCAGTTGCACGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTGCGGTATCTCATGCAAACACATCAAAAGAACCAGTTGAAAGACACAATAGATGTTGAGGAGCCTGAAGAAGTGGGTGATCCTTTGACTGCTGAAGAGCTAGAGGAGAAGGAGCGACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGAGCTTGTGAGAAATATGGGCGAAATGATATAAAAAGTATTGCTTCAGAGATGGAAGGAAAAACGGAAGAAGAAGTTGAGAGATATGCAAAGGTCTTTAAGGAGAGATACAAAGAGTTAAATGATTATGATAGAATCATCAAGAACATAGAGAGAGGGGAAGCAAGGATTTCTCGTAAAGACGAAATAATGAAAGCCATTGGGAAGAAACTGGATCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGGAAGTTGTATAATGAAGAATGTGATCGTTTCATGATATGCATGGTTCACAAGCTTGGTTACGGAAACTGGGACGAACTGAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTATCAAGTCGCGAACGACACAGGAACTTGCGAGAAGGTGTGATACCTTAATCCGATTAGTGGAGAAAGAAAACCAGGAACATGATGAAAGGGAGAGACAGGCCCGTAAAGAAAAGAAGCTCGCGAAGAGTATGACACCATCAAAACGTTCCTTAGCGAGGCAGACCGAGAGCCCAACTAACCTAAAGAAGCGAAAGCAATTATCAATGGACGATTATGTAAGCTCTGGAAAACGAAGGAAGTAA 3174 42.22 MAKPSKRQASSDEAMSNGSSSSEEEEQTNDQINEEEDEEELEAVARSAGSDEDEAADDSDNDGSPAENGEEEDGSNDGQDDKTDIGRREKARLREMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGDHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLLSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRDIRENLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNRPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEHDERERQARKEKKLAKSMTPSKRSLARQTESPTNLKKRKQLSMDDYVSSGKRRK 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4383150 4390290 - PI0022863.1 Cmetu11g0294 369026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0294 1057 MobiDBLite consensus disorder prediction 27 42 - -
Cmetu11g0294 1057 Coils Coil 93 113 - -
Cmetu11g0294 1057 Gene3D - 921 1024 - -
Cmetu11g0294 1057 Gene3D - 419 695 IPR027417 -
Cmetu11g0294 1057 Gene3D ISWI, HAND domain 734 832 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cmetu11g0294 1057 ProSiteProfiles SANT domain profile. 832 884 IPR017884 -
Cmetu11g0294 1057 FunFam ISWI chromatin-remodeling complex ATPase CHR11 921 1024 - -
Cmetu11g0294 1057 FunFam ISWI chromatin-remodeling complex ATPase CHR11 734 832 - -
Cmetu11g0294 1057 Pfam SNF2-related domain 211 435 IPR000330 GO:0005524|GO:0140658
Cmetu11g0294 1057 CDD SANT 836 880 IPR001005 -
Cmetu11g0294 1057 SMART ultradead3 194 386 IPR014001 -
Cmetu11g0294 1057 SUPERFAMILY Homeodomain-like 888 1010 IPR009057 -
Cmetu11g0294 1057 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Cmetu11g0294 1057 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 833 887 - -
Cmetu11g0294 1057 FunFam Chromatin-remodeling complex ATPase 199 414 - -
Cmetu11g0294 1057 MobiDBLite consensus disorder prediction 142 184 - -
Cmetu11g0294 1057 SUPERFAMILY Homeodomain-like 836 886 IPR009057 -
Cmetu11g0294 1057 Gene3D - 833 887 - -
Cmetu11g0294 1057 MobiDBLite consensus disorder prediction 53 78 - -
Cmetu11g0294 1057 Coils Coil 994 1017 - -
Cmetu11g0294 1057 MobiDBLite consensus disorder prediction 1035 1057 - -
Cmetu11g0294 1057 MobiDBLite consensus disorder prediction 9 26 - -
Cmetu11g0294 1057 Pfam SLIDE 890 1000 IPR015195 GO:0003677|GO:0005634|GO:0006338
Cmetu11g0294 1057 MobiDBLite consensus disorder prediction 1001 1021 - -
Cmetu11g0294 1057 Pfam HAND 746 828 IPR015194 GO:0003677|GO:0006338|GO:0031491
Cmetu11g0294 1057 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 187 1043 - -
Cmetu11g0294 1057 MobiDBLite consensus disorder prediction 79 94 - -
Cmetu11g0294 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 679 IPR027417 -
Cmetu11g0294 1057 SMART helicmild6 513 597 IPR001650 -
Cmetu11g0294 1057 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 745 835 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cmetu11g0294 1057 CDD SF2_C_SNF 483 608 - -
Cmetu11g0294 1057 Gene3D iswi atpase 888 920 - -
Cmetu11g0294 1057 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524
Cmetu11g0294 1057 Pfam Helicase conserved C-terminal domain 485 597 IPR001650 -
Cmetu11g0294 1057 MobiDBLite consensus disorder prediction 1001 1057 - -
Cmetu11g0294 1057 Gene3D - 199 414 IPR038718 -
Cmetu11g0294 1057 FunFam ISWI chromatin remodeling complex ATPase ISW1 422 695 - -
Cmetu11g0294 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 413 IPR027417 -
Cmetu11g0294 1057 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 638 IPR001650 -
Cmetu11g0294 1057 SMART sant 935 996 IPR001005 -
Cmetu11g0294 1057 SMART sant 833 882 IPR001005 -
Cmetu11g0294 1057 MobiDBLite consensus disorder prediction 1 94 - -
Cmetu11g0294 1057 Coils Coil 22 42 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0294 K11654 - - csv:101221495 1976.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1105 Cmetu-Chr2:23496601 Cmetu11g0294 Cmetu-Chr11:4383150 1.50E-16 dispersed
Cmetu05g1083 Cmetu-Chr5:21879920 Cmetu11g0294 Cmetu-Chr11:4383150 5.40E-119 dispersed
Cmetu06g2739 Cmetu-Chr6:1178701 Cmetu11g0294 Cmetu-Chr11:4383150 3.80E-102 dispersed
Cmetu07g1578 Cmetu-Chr7:24075909 Cmetu11g0294 Cmetu-Chr11:4383150 7.80E-82 dispersed
Cmetu07g1978 Cmetu-Chr7:24067921 Cmetu11g0294 Cmetu-Chr11:4383150 3.80E-21 dispersed
Cmetu07g2094 Cmetu-Chr7:18640586 Cmetu11g0294 Cmetu-Chr11:4383150 2.20E-39 dispersed
Cmetu07g2199 Cmetu-Chr7:4165454 Cmetu11g0294 Cmetu-Chr11:4383150 7.20E-122 dispersed
Cmetu10g1824 Cmetu-Chr10:11587090 Cmetu11g0294 Cmetu-Chr11:4383150 5.00E-75 dispersed
Cmetu11g0294 Cmetu-Chr11:4383150 Cmetu11g1458 Cmetu-Chr11:2140138 8.10E-87 dispersed
Cmetu11g0294 Cmetu-Chr11:4383150 Cmetu08g1564 Cmetu-Chr8:1080101 8.40E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
Vvi7g199 Blo05g00334 Blo06g00476 Bda04g00584 Bda10g00606 . Bpe06g00492 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0684 Cone11ag0873 . . . . . . . . Bpe10g00440 . Bma09g00709 Bma15g00556 Sed09g0640 . . . . . . . . Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . . . . .
Vvi15g844 . . . . Bpe14g00988 . . . . . Cma06g01073 Cma14g02045 . Car14g01852 . . Cpe03g01736 Bhi01g00345 . . . . . . Cla05g00160 Cam05g0175 Cec05g0173 Cco05g0184 Clacu05g0172 Cmu05g0164 Cre05g0228 Cone14ag0368 Cone15ag0405 . . Lsi05g02048 . . Cme06g00171 Blo02g00363 . . Bda13g00342 . . Bma02g01053 . Sed09g0640 . Cmo14g02109 . . . . . . Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . . Csa03g00884 Chy06g00163 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8705 PF00176 SNF2_N 5.40E-63 CL0023 Cmetu TR