Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0434 ATGGGAAGTTTGGAAGAGGAAAAATTAGTTCAAATGGTTGATGATTTTATTGAATCAGTTGATCATCATCAATCACCAACTTCTTCTTCTTCTTCTTTTCCTCTTTCTTCCAATTCCAATTCCAATTCCAAATCCCATTATTTTTTCACATTAAAGGAGATTCTTGGGAATGGAAGTAAGGAAGAAGAAGAGGTGGGTGAGAGTGTGATGAAACACTTGAGAAGGTGGACAACATCAGATGCTTCCAAAACAAATAGCCTTAAGAAATGGCTTGTGATGAAGCTCAAAATGGACGGCTATGATTCTTCTCATCTTTGTCATACCTCTTGGGTCACTTCCATGGGCTGCCCAGCTGGGGATTATGAATACATAGAGATGAGAATGAAGGATGAATTAGGGAGCAGAAAGAGATTGATAATAGACATAGAATTCAAAGCTCAGTTTGAGGTAGCAAGAGCAACAGAAGAATACAAACAACTCACAAAAGCACTTCCATCAGTGTTTGTAGGAAGTGAAGAGAAAGTTAAGAGAATAATAAGTGTTTTATGTTCAGCAGCCAAACAATCCCTTAAGAAGAGTGGTCTTCACATTCCCCCTTGGAGAACTTCCACTTATATGCATGCCAAATGGCTTCTTCTTCTTGATCACTCTAATAATAATATTAATAATTATAATTATATCCCTAATAATATTAATATTATGAGACAAAAAAATAATAATGACAATAATAATAACAATAAGTATTATTATTGGAAGCCTCCAATGGTGAATTAA 774 34.88 MGSLEEEKLVQMVDDFIESVDHHQSPTSSSSSFPLSSNSNSNSKSHYFFTLKEILGNGSKEEEEVGESVMKHLRRWTTSDASKTNSLKKWLVMKLKMDGYDSSHLCHTSWVTSMGCPAGDYEYIEMRMKDELGSRKRLIIDIEFKAQFEVARATEEYKQLTKALPSVFVGSEEKVKRIISVLCSAAKQSLKKSGLHIPPWRTSTYMHAKWLLLLDHSNNNINNYNYIPNNINIMRQKNNNDNNNNNKYYYWKPPMVN 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30447208 30449408 + PI0013189.1 Cmetu11g0434 369166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0434 257 PANTHER OS03G0796600 PROTEIN 6 211 IPR006502 -
Cmetu11g0434 257 Pfam PDDEXK-like family of unknown function 11 211 IPR006502 -
Cmetu11g0434 257 NCBIfam uncharacterized plant-specific domain TIGR01615 89 211 IPR006502 -
Cmetu11g0434 257 MobiDBLite consensus disorder prediction 22 41 - -
Cmetu11g0434 257 MobiDBLite consensus disorder prediction 20 41 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0434 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g3071 Cmetu-Chr4:17163830 Cmetu11g0434 Cmetu-Chr11:30447208 8.60E-23 dispersed
Cmetu11g0434 Cmetu-Chr11:30447208 Cmetu11g1872 Cmetu-Chr11:12779180 9.00E-24 dispersed
Cmetu11g0434 Cmetu-Chr11:30447208 Cmetu05g0608 Cmetu-Chr5:19021245 3.50E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1275 . . . . . . . . Cmo02g00628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe05g01064 . Bhi10g01662 Tan07g0871 Cmetu11g0434 . Hepe08g1250 . . . . . . . . . Lsi10g00715 . . Cme11g00067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013620 0 1 0 0 0 1 1 1 1 0 0 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 2 0 1 2 26