Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0442 ATGGCAGTGGACGAAGAATCTCCATTGAAGCTCTACTCATTCTGGGCCAGCACTTGTGCCCAACGCGTTCGAATTGCCCTCAACCTCAAAGGGCTAAACTTTCAGTACAAAGCTGTTGATCTTTTGAAGGGAGAGCATTTGGCTCCTGAGTATCTAAAGCTCAATCCTGTTGGTTTTGTTCCTACTCTTGTGGATGGAGATACTATTATTGCTGACTCTTTTGCTATAATAATGTATTTGGAGGAAAAGTATCCTCAACATCCTTTGTTGCCTAGTGATCTTGTTAAAAGGGCTATTAATCACCAGTTTGCAAATATTGTTTCTTCAAGCATACAACCTCTTCAAAATTTAATTGTTGAGAAATACCTTGAGGAAAAATGTGGTACTGAGAAGAAACTTTCTTGGATTCACATGATCATTGGAAAAGGTTTCTTAGCACTAGAAAAGTTGCTAACAGTTCATGCTGGAAAATTTGCTACTGGAGACCAAATTTATATGGCAGACTTGTTTTTGGCACCTCAACTTCATAGGGCCATTGAAACATTCAATGTTGACATGTCCAAGTTTCCAATTCTATCAAGATTGTACGAAGAATACAAGAAGGTAGCAGCATTTCATGATGCAGCACCAGAAAACCAACCTGATGCTCCATCTCAAAACTAA 663 38.91 MAVDEESPLKLYSFWASTCAQRVRIALNLKGLNFQYKAVDLLKGEHLAPEYLKLNPVGFVPTLVDGDTIIADSFAIIMYLEEKYPQHPLLPSDLVKRAINHQFANIVSSSIQPLQNLIVEKYLEEKCGTEKKLSWIHMIIGKGFLALEKLLTVHAGKFATGDQIYMADLFLAPQLHRAIETFNVDMSKFPILSRLYEEYKKVAAFHDAAPENQPDAPSQN 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30694967 30698486 - PI0007980.1 Cmetu11g0442 369174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0442 220 Gene3D - 92 219 - -
Cmetu11g0442 220 SFLD Glutathione Transferase (cytosolic) 9 199 IPR040079 -
Cmetu11g0442 220 Pfam Glutathione S-transferase, N-terminal domain 11 87 IPR004045 -
Cmetu11g0442 220 FunFam Maleylacetoacetate isomerase 92 219 - -
Cmetu11g0442 220 SUPERFAMILY GST C-terminal domain-like 88 217 IPR036282 -
Cmetu11g0442 220 CDD GST_N_Zeta 9 81 IPR034333 -
Cmetu11g0442 220 Gene3D Glutaredoxin 7 91 - -
Cmetu11g0442 220 SFLD Main (cytGST) 9 199 - -
Cmetu11g0442 220 SUPERFAMILY Thioredoxin-like 7 91 IPR036249 -
Cmetu11g0442 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 7 88 IPR004045 -
Cmetu11g0442 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 218 IPR010987 -
Cmetu11g0442 220 PANTHER MALEYLACETOACETATE ISOMERASE 9 216 - -
Cmetu11g0442 220 CDD GST_C_Zeta 94 213 IPR034330 -
Cmetu11g0442 220 NCBIfam maleylacetoacetate isomerase 10 216 IPR005955 GO:0003824|GO:0005737|GO:0009072
Cmetu11g0442 220 FunFam Glutathione S-transferase Z1 7 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0442 K01800 - - csv:116401624 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0557 Cmetu-Chr3:4864278 Cmetu11g0442 Cmetu-Chr11:30694967 5.70E-11 dispersed
Cmetu07g1144 Cmetu-Chr7:19448751 Cmetu11g0442 Cmetu-Chr11:30694967 7.00E-17 dispersed
Cmetu11g0017 Cmetu-Chr11:30671716 Cmetu11g0442 Cmetu-Chr11:30694967 2.10E-85 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g2501 . 1 210 Glutathione S-transferase Gene Family AT4G02520 59.6 5.6e-64 241.1
Cmetu01g1857 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 1.3e-63 240.0
Cmetu01g1052 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 7.6e-61 230.7
Cmetu01g2501 . 1 211 Glutathione S-transferase Gene Family AT2G02930 60.9 1.8e-65 246.1
Cmetu01g1052 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 1.6e-63 239.6
Cmetu01g1857 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 3.7e-63 238.4
Cmetu01g1857 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.2 5.0e-59 224.9
Cmetu01g2501 . 6 215 Glutathione S-transferase Gene Family AT1G02950 54.0 8.6e-59 224.2
Cmetu01g1052 . 5 206 Glutathione S-transferase Gene Family AT1G02950 55.2 8.0e-57 217.6
Cmetu01g2501 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.3 6.1e-63 237.7
Cmetu01g1857 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 1.4e-62 236.5
Cmetu01g1052 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 7.5e-61 230.7
Cmetu01g2501 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.7 1.6e-66 249.6
Cmetu01g1857 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 1.2e-63 240.0
Cmetu01g1052 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.1 4.7e-63 238.0
Cmetu01g1857 . 1 215 Glutathione S-transferase Gene Family AT2G47730 57.9 1.4e-67 253.4
Cmetu01g2501 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 7.5e-66 247.7
Cmetu01g1052 . 1 214 Glutathione S-transferase Gene Family AT2G47730 54.9 6.5e-62 234.6
Cmetu01g1572 . 5 215 Glutathione S-transferase Gene Family AT3G62760 59.7 9.0e-73 270.4
Cmetu08g0148 . 3 179 Glutathione S-transferase Gene Family AT2G29490 52.2 5.2e-44 174.9
Cmetu08g0148 . 6 163 Glutathione S-transferase Gene Family AT2G29470 50.9 1.3e-37 153.7
Cmetu06g0989 . 2 205 Glutathione S-transferase Gene Family AT2G29450 50.5 2.6e-51 199.1
Cmetu08g0148 . 3 159 Glutathione S-transferase Gene Family AT2G29440 53.5 2.3e-39 159.5
Cmetu08g0413 . 4 216 Glutathione S-transferase Gene Family AT3G09270 52.6 2.7e-64 242.3
Cmetu08g1346 . 1 221 Glutathione S-transferase Gene Family AT3G09270 53.8 7.8e-64 240.7
Cmetu08g0468 . 5 218 Glutathione S-transferase Gene Family AT3G09270 54.0 2.3e-60 229.2
Cmetu08g0998 . 3 215 Glutathione S-transferase Gene Family AT3G09270 51.4 2.6e-59 225.7
Cmetu08g0227 . 3 207 Glutathione S-transferase Gene Family AT3G09270 52.4 5.4e-57 218.0
Cmetu08g0211 . 1 218 Glutathione S-transferase Gene Family AT3G09270 50.2 6.0e-56 214.5
Cmetu07g0951 . 1 216 Glutathione S-transferase Gene Family AT1G78380 68.1 5.4e-86 314.3
Cmetu07g1785 . 1 215 Glutathione S-transferase Gene Family AT1G78380 69.8 5.4e-86 314.3
Cmetu07g1476 . 1 201 Glutathione S-transferase Gene Family AT1G78380 63.6 7.3e-75 277.3
Cmetu09g1597 . 4 221 Glutathione S-transferase Gene Family AT1G78380 54.6 4.8e-66 248.1
Cmetu07g0922 . 5 215 Glutathione S-transferase Gene Family AT1G78380 53.3 7.9e-61 230.7
Cmetu07g0212 . 1 166 Glutathione S-transferase Gene Family AT1G78380 64.5 2.5e-54 209.1
Cmetu07g1785 . 8 215 Glutathione S-transferase Gene Family AT1G78370 63.5 3.1e-78 288.5
Cmetu07g0951 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.7 1.5e-75 279.6
Cmetu07g1476 . 7 201 Glutathione S-transferase Gene Family AT1G78370 61.5 8.3e-71 263.8
Cmetu09g1597 . 7 220 Glutathione S-transferase Gene Family AT1G78370 52.8 5.4e-62 234.6
Cmetu07g0922 . 8 209 Glutathione S-transferase Gene Family AT1G78370 51.5 1.2e-56 216.9
Cmetu07g0212 . 7 166 Glutathione S-transferase Gene Family AT1G78370 57.5 2.4e-46 182.6
Cmetu07g1785 . 1 215 Glutathione S-transferase Gene Family AT1G78340 65.1 1.8e-81 299.3
Cmetu07g0951 . 1 216 Glutathione S-transferase Gene Family AT1G78340 62.0 7.0e-78 287.3
Cmetu07g1476 . 1 201 Glutathione S-transferase Gene Family AT1G78340 57.9 2.7e-69 258.8
Cmetu09g1597 . 4 219 Glutathione S-transferase Gene Family AT1G78340 52.3 2.1e-61 232.6
Cmetu07g0922 . 5 208 Glutathione S-transferase Gene Family AT1G78340 53.2 6.6e-60 227.6
Cmetu07g0212 . 1 177 Glutathione S-transferase Gene Family AT1G78340 55.9 3.3e-51 198.7
Cmetu06g0989 . 1 156 Glutathione S-transferase Gene Family AT1G78340 50.3 4.0e-41 165.2
Cmetu07g1785 . 3 206 Glutathione S-transferase Gene Family AT1G78320 54.4 5.0e-59 224.6
Cmetu07g1785 . 1 219 Glutathione S-transferase Gene Family AT1G17180 70.8 5.6e-91 330.9
Cmetu07g0951 . 1 218 Glutathione S-transferase Gene Family AT1G17180 62.4 1.6e-82 302.8
Cmetu07g1476 . 1 203 Glutathione S-transferase Gene Family AT1G17180 65.7 1.9e-78 289.3
Cmetu09g1597 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.3 5.7e-67 251.1
Cmetu07g0922 . 5 209 Glutathione S-transferase Gene Family AT1G17180 54.1 3.8e-63 238.4
Cmetu07g0212 . 1 166 Glutathione S-transferase Gene Family AT1G17180 61.4 2.1e-53 206.1
Cmetu07g1785 . 1 218 Glutathione S-transferase Gene Family AT1G17190 60.6 7.1e-78 287.3
Cmetu07g0951 . 3 217 Glutathione S-transferase Gene Family AT1G17190 55.8 1.3e-71 266.5
Cmetu07g1476 . 2 201 Glutathione S-transferase Gene Family AT1G17190 54.9 4.5e-64 241.5
Cmetu07g0922 . 5 213 Glutathione S-transferase Gene Family AT1G17190 50.7 2.9e-55 212.2
Cmetu07g0212 . 2 166 Glutathione S-transferase Gene Family AT1G17190 53.9 6.1e-45 177.9
Cmetu07g0951 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.1 4.8e-69 258.1
Cmetu07g1785 . 1 215 Glutathione S-transferase Gene Family AT3G43800 53.0 2.9e-66 248.8
Cmetu07g1476 . 3 189 Glutathione S-transferase Gene Family AT3G43800 53.4 3.1e-60 228.8
Cmetu07g1785 . 6 219 Glutathione S-transferase Gene Family AT1G53680 56.5 3.0e-68 255.4
Cmetu09g1597 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 2.0e-64 242.7
Cmetu07g0951 . 4 218 Glutathione S-transferase Gene Family AT1G53680 53.9 3.5e-64 241.9
Cmetu07g1476 . 1 201 Glutathione S-transferase Gene Family AT1G53680 53.9 3.7e-58 221.9
Cmetu11g0017 . 51 217 Glutathione S-transferase Gene Family AT2G02390 66.5 3.2e-58 221.9
Cmetu11g0442 . 50 218 Glutathione S-transferase Gene Family AT2G02390 59.8 4.3e-55 211.5
Cmetu11g0017 . 8 220 Glutathione S-transferase Gene Family AT2G02380 62.4 1.6e-72 269.6
Cmetu11g0442 . 6 218 Glutathione S-transferase Gene Family AT2G02380 57.7 1.4e-68 256.5
Cmetu06g2239 . 18 228 Glutathione S-transferase Gene Family AT2G02380 50.9 2.5e-54 209.1
Cmetu07g1782 . 1 237 Glutathione S-transferase Gene Family AT5G41210 67.5 7.4e-92 334.0
Cmetu07g1782 . 1 237 Glutathione S-transferase Gene Family AT5G41240 66.7 2.8e-89 326.6
Cmetu08g1266 . 9 233 Glutathione S-transferase Gene Family AT5G02780 66.7 4.6e-83 304.7
Cmetu08g1525 . 4 232 Glutathione S-transferase Gene Family AT5G02780 67.1 3.9e-82 301.6
Cmetu10g0072 . 75 294 Glutathione S-transferase Gene Family AT5G02780 63.5 1.5e-78 289.7
Cmetu08g1557 . 14 206 Glutathione S-transferase Gene Family AT5G02780 67.2 1.7e-72 269.6
Cmetu10g0072 . 17 292 Glutathione S-transferase Gene Family AT3G55040 59.2 1.6e-85 313.2
Cmetu08g1525 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 6.8e-76 281.2
Cmetu08g1266 . 4 231 Glutathione S-transferase Gene Family AT3G55040 58.3 2.4e-73 272.7
Cmetu08g1557 . 4 206 Glutathione S-transferase Gene Family AT3G55040 57.4 6.8e-68 254.6
Cmetu08g1525 . 4 232 Glutathione S-transferase Gene Family AT5G02790 68.3 7.3e-89 323.9
Cmetu08g1266 . 1 233 Glutathione S-transferase Gene Family AT5G02790 67.2 9.6e-89 323.6
Cmetu10g0072 . 67 294 Glutathione S-transferase Gene Family AT5G02790 61.1 7.3e-81 297.4
Cmetu08g1557 . 6 206 Glutathione S-transferase Gene Family AT5G02790 67.8 1.1e-76 283.5
Cmetu10g0567 . 1 212 Glutathione S-transferase Gene Family AT1G19570 68.1 3.8e-84 308.1
Cmetu10g0567 . 1 211 Glutathione S-transferase Gene Family AT1G75270 72.6 1.9e-88 322.4
Cmetu10g0567 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 8.9e-72 267.3
Cmetu06g2568 . 5 229 Glutathione S-transferase Gene Family AT5G16710 51.1 3.3e-66 248.8
Cmetu07g2081 . 1 249 Glutathione S-transferase Gene Family AT1G77290 66.5 5.0e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000862 1 6 2 2 2 2 3 2 2 2 1 1 3 3 3 3 1 3 3 2 3 2 3 3 4 2 3 8 7 3 85