Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0453 ATGCATGCTTGTAATAGATTTTCTTTACTTCTAAGTAACTATGTGGTTACCTCTGCCATTCATAAAAGGATTTATCAAAATATTTCCTCTAAATGCTTGCATTCTCTCCATCAATACAAACGAGAGAAACCCATTTCACGATTCAGTAGACAGTCAAGGAAGGGAACTAAGGTAGTTAAGAAGGAAGAAGTAAATCCAAGGCTTTACACTAGAGATATTGTGAGGAACATATGCAATACTCTTAGAAATTGCTCATGGGGTTCTGCTCAAAAACACCTAGAGATGCTCCCTATTAGATGGGATTCTTATCTCATCAACCAAGTTTTGAAGACTCATCCACCATTGGAGAAGACATGGTTATTCTTCAATTGGGCTTCTAGGCTGCAAGTCTTCAAACATGACCAGTATACGTACACGACGATGCTGGATATTTTTGGAGAAGCTGGGAGAATTTCATCCATGAATTATGTATTTCAACAGATGAAGGAGAAGAGGATAAAGATAGATGCAGTTACATATACTTCGTTAATGCACTGGCGTTCAAATTCAGGAGATGTTGATGGAGCTATAAAGGTTTGGAAGGAAATGAAAGCCAATGGCTGCCATCCAACAGTAGTTTCTTATACTGCTTATATGAAGATTTTGTTGGACAATGGCCAAATTAAGGAGGCCACTGCTACATACAAGGAGATGCTTGGATCTGGGCTGTCTCCAAATTGTTGTACTTACACCATCTTAATGGAATACCTTATTGGAGAGGGTAAATGCGAAGAAGCCCTTGATATTTTTTCCAAAATGCAAGATGCTGGAGTATATCCTGATAAAGCAGCATGCAATATATTGATTCAGAAATGCTGTAAATCAGGGGAGAGGTTAGTAATGACACAAATCCTCGAGTACATGAAAGAGAACTGCTTTGTGCTTCGATACCCTGTCTTTGTTGAAGCACATGAATCTTTGAAAAGTTGTTCTGTTAGTTATACCCTACTCAGGCAAATTAATCCTCATATAGAAATTGAATCAATCAGTAAGGGTGAGGTTGTGGATGTTAGTACAGGTTCTAATACTATTCCTCCCAATCTAGATCATGAGCTTTTAGCAATGCTGTTGAAAGATAATAAACTTACTGCTATTGACCACATGCTCATTGGGATAGTAGATAAGAACATAAAGTTGGATTCTTCAATTATTTATTCCATCATTGAGGTAAATTGCAAAAGTAATCGACCCAACAGTGCTCTGCTGGCTTTTGATTACTGTTTAAAAAACGGTGTTAACATTGAGAGAAAGTTGTATCTTGACTTGATCGGGATTCTGATACGATCTAGTATATATCCGAAGCTGTTGGAAATTGTTCAGGAAATGTATACGCAAGGGCATTGCCTTGGTCTCTATCATGCCACACTTATACTTTATAGTCTTGGAAAAGCTGGAAAACCTCAATATGCAAGGAAAGTTTTTAATATGTTGCCTGAAGAATTGAAGTGCACGGCAACTTACACTACTCTGGTTGATGCTTATTTCTCTGCTGGAAGTTCTGGTAAAGGGCTTAAAATTTTCAATGCAATGCGAAAGAAAGGATTTACACCATCTTTAGGCACGTATAATGTGCTGTTAACTGGTCTTGCGAATAGTGGTAGAGGTGTCGAATTAAATATTTATAGAAGGGAGAAGAAGAGTTTTGAGATTAGTCATCATTCTCATATCAATACAATATTGGATGATGAAAGGATTTGTGATCTTCTTTTTGGAGAATTAGTATCTTGA 1767 37.24 MHACNRFSLLLSNYVVTSAIHKRIYQNISSKCLHSLHQYKREKPISRFSRQSRKGTKVVKKEEVNPRLYTRDIVRNICNTLRNCSWGSAQKHLEMLPIRWDSYLINQVLKTHPPLEKTWLFFNWASRLQVFKHDQYTYTTMLDIFGEAGRISSMNYVFQQMKEKRIKIDAVTYTSLMHWRSNSGDVDGAIKVWKEMKANGCHPTVVSYTAYMKILLDNGQIKEATATYKEMLGSGLSPNCCTYTILMEYLIGEGKCEEALDIFSKMQDAGVYPDKAACNILIQKCCKSGERLVMTQILEYMKENCFVLRYPVFVEAHESLKSCSVSYTLLRQINPHIEIESISKGEVVDVSTGSNTIPPNLDHELLAMLLKDNKLTAIDHMLIGIVDKNIKLDSSIIYSIIEVNCKSNRPNSALLAFDYCLKNGVNIERKLYLDLIGILIRSSIYPKLLEIVQEMYTQGHCLGLYHATLILYSLGKAGKPQYARKVFNMLPEELKCTATYTTLVDAYFSAGSSGKGLKIFNAMRKKGFTPSLGTYNVLLTGLANSGRGVELNIYRREKKSFEISHHSHINTILDDERICDLLFGELVS 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29671094 29674437 + PI0020555.1 Cmetu11g0453 369185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0453 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Cmetu11g0453 588 Gene3D Tetratricopeptide repeat domain 363 577 IPR011990 GO:0005515
Cmetu11g0453 588 NCBIfam pentatricopeptide repeat 499 531 IPR002885 -
Cmetu11g0453 588 NCBIfam pentatricopeptide repeat 136 170 IPR002885 -
Cmetu11g0453 588 NCBIfam pentatricopeptide repeat 241 274 IPR002885 -
Cmetu11g0453 588 NCBIfam pentatricopeptide repeat 206 240 IPR002885 -
Cmetu11g0453 588 NCBIfam pentatricopeptide repeat 171 205 IPR002885 -
Cmetu11g0453 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Cmetu11g0453 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Cmetu11g0453 588 Pfam Pentatricopeptide repeat domain 262 304 IPR002885 -
Cmetu11g0453 588 Gene3D Tetratricopeptide repeat domain 27 222 IPR011990 GO:0005515
Cmetu11g0453 588 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 363 548 - -
Cmetu11g0453 588 Gene3D Tetratricopeptide repeat domain 231 305 IPR011990 GO:0005515
Cmetu11g0453 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Cmetu11g0453 588 Pfam PPR repeat family 496 544 IPR002885 -
Cmetu11g0453 588 Pfam PPR repeat family 134 178 IPR002885 -
Cmetu11g0453 588 Pfam PPR repeat family 203 248 IPR002885 -
Cmetu11g0453 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0453 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g913 Blo04g00953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01018 . Sed01g0084 . . . . . . . . Bhi10g02231 Tan07g1031 Cmetu11g0453 . Hepe10g0832 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010326 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31