Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0481 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCTGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGATGACGAAAAGAGGAGAGAGAAACGACGATGGATTTTTAGAAAACCAACTAATCAGCAGCCGGAGCCACTCGCCGCCCACCAACCGCCGTCTAAGCCGGCAGCGGCTCTACCCAATGATTCTGTAGCTTTAGAAGACCAGAAACATGCCCTTGCAGTGGCTGAAGCTGCCATGGTTGCTGCTAGAGCGGCTGCACAAGCTGTCCACCTTACCCGGCCTGCTCGACCTGGATTGGATCGACATCGTCTCGCGGCCATTGTGATTCAAACGGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCATTGAAGGGGTTAGTGAAGTTGCAAGCATTAGTGAGAGGACACAACGTGAGGAAGCAAGCAAAGACAACACTGCAATGTATGAAAGCATTAGTGAGAGTACAGGAAAAAGTGCTGGATCACCGGATGCGACTATCCCTCGAGGGCAGCCGACGGTCGACCTTTAGCGACACCAACAGCGTCTACGAATCTCGCTATGCTCAAGATGTGTCTGAAAGGAAGACTATTAAGTGTGTGTCAAGAGAAGGAAGCAGCATTACAGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTTAAGGCAATGTTACAACTTAGAAGAGACGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAGCAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAACAGAGCTTGAAGAAGGACAAAAGTGGCTAGACCAATGGATGGCAAAGAAGCCATGGGAGAGCAGGGCAAGAGCTTCCACAGATCACAGACCACAGCCCCTTAAAACCCTTGAAATCGACACCTCTCGACCCTACTCCTACTTATCTCCCAACAATCTCCACACAACGAATTATCAACCTCAATCCCAAAGATCAAACTCGCTTTCCTCCTCCTCCCCACTCCACAGAGCCCATCAACACCAATTCTCCATTACCCCATCCCCGTCAAAATCTCGACCGGTCCCTCAAGTTCGGTCGGCGAGTCCTCGCTACAGCAGAGAAGATAGAAATCAAATCAACCATCACCACATTACATCCCAAACACCAAGCTTGAGGTCAAAATATCAACATCCCAAAGGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTGCGGTCACAAAGTGCGCCAAGGCAAAGGCCAGCAACACCCGAGAGGGAACGAGTTGGAACTGCGAGGAAACGACTATCGTTTCCAGTACCGCCGGATCCTTACGGTAGAATAGCAGGGTGTTCTGTTTATGGGAATAGCATGAAGAGTCCAAGTTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCTCCATCTTCAACCACTGATCTTAGAAGGTGGTTGAGATGA 1536 49.02 MGKKGGSSWLTAVKRAFRSPTKDDDEKRREKRRWIFRKPTNQQPEPLAAHQPPSKPAAALPNDSVALEDQKHALAVAEAAMVAARAAAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYAQDVSERKTIKCVSREGSSITEDWDERAHTVEEVKAMLQLRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQTELEEGQKWLDQWMAKKPWESRARASTDHRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQPQSQRSNSLSSSSPLHRAHQHQFSITPSPSKSRPVPQVRSASPRYSREDRNQINHHHITSQTPSLRSKYQHPKGGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYGRIAGCSVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2381900 2385433 + PI0001617.1 Cmetu11g0481 369213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0481 511 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Cmetu11g0481 511 Pfam Protein of unknown function (DUF4005) 364 457 IPR025064 -
Cmetu11g0481 511 PANTHER IQ-DOMAIN 5-RELATED 1 446 - -
Cmetu11g0481 511 MobiDBLite consensus disorder prediction 17 38 - -
Cmetu11g0481 511 MobiDBLite consensus disorder prediction 1 59 - -
Cmetu11g0481 511 SMART iq_5 126 147 IPR000048 GO:0005515
Cmetu11g0481 511 SMART iq_5 103 125 IPR000048 GO:0005515
Cmetu11g0481 511 Pfam IQ calmodulin-binding motif 131 147 IPR000048 GO:0005515
Cmetu11g0481 511 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Cmetu11g0481 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 149 IPR027417 -
Cmetu11g0481 511 MobiDBLite consensus disorder prediction 305 361 - -
Cmetu11g0481 511 MobiDBLite consensus disorder prediction 404 427 - -
Cmetu11g0481 511 FunFam IQ-domain 11 103 154 - -
Cmetu11g0481 511 Gene3D - 101 155 - -
Cmetu11g0481 511 MobiDBLite consensus disorder prediction 283 299 - -
Cmetu11g0481 511 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Cmetu11g0481 511 MobiDBLite consensus disorder prediction 283 437 - -
Cmetu11g0481 511 MobiDBLite consensus disorder prediction 485 511 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0481 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1191 Cmetu-Chr6:193013 Cmetu11g0481 Cmetu-Chr11:2381900 8.70E-110 dispersed
Cmetu08g1476 Cmetu-Chr8:16562102 Cmetu11g0481 Cmetu-Chr11:2381900 9.20E-14 dispersed
Cmetu09g1788 Cmetu-Chr9:245893 Cmetu11g0481 Cmetu-Chr11:2381900 8.30E-15 dispersed
Cmetu09g1857 Cmetu-Chr9:2282829 Cmetu11g0481 Cmetu-Chr11:2381900 2.30E-09 dispersed
Cmetu11g0481 Cmetu-Chr11:2381900 Cmetu11g0606 Cmetu-Chr11:885017 1.30E-10 dispersed
Cmetu11g0481 Cmetu-Chr11:2381900 Cmetu07g0147 Cmetu-Chr7:23379390 1.40E-20 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0768 . 112 281 IQD Protein Family AT3G09710 58.2 7.1e-51 198.7
Cmetu09g0362 . 1 470 IQD Protein Family AT3G52290 53.3 3.8e-99 359.0
Cmetu02g0865 . 1 408 IQD Protein Family AT3G22190 57.1 2.2e-96 349.7
Cmetu07g0147 . 1 438 IQD Protein Family AT2G26180 60.2 2.3e-117 419.5
Cmetu07g1332 . 40 216 IQD Protein Family AT2G33990 55.0 5.4e-48 188.3
Cmetu07g1332 . 43 216 IQD Protein Family AT3G15050 63.3 9.0e-56 214.2
Cmetu11g0481 . 1 511 IQD Protein Family AT4G00820 50.6 5.9e-110 395.2
Cmetu06g1191 . 1 467 IQD Protein Family AT4G00820 50.3 6.9e-103 371.7
Cmetu02g1708 . 1 375 IQD Protein Family AT3G16490 50.1 1.9e-62 236.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54