Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0485 ATGGCTTCTTTCTCCTTCTCCTCCTCGCTCCTTCCTTCTTCAGTCTCTTTCGATCATGGCTCCACTTCCTTTTTCCCCATCTTTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACACCCCAATTCTCGCATTGTTCGCTGTGCATTTGCAGCTCCCACTAGAAAATCCCCTGTCCCATCTACTTCTTCCTCACCTGCTAAGAAGAGGCACTGGAAGCAAGGGGAATTTCCAGGAATTACAGAGACATCCACCCCCAGGAAGACCCCTCTCAAGAATGTCAAAAAGAAACTAGACCGGAAGAATAATGCCAAGGCTTGGGCCAACACCGTCACTGAAGCCTTGTCTGACCATATCACGAACAAACGGTGGCTTCAAGCTCTTGAGGTGTTTGAAATGCTCCGCGAACAACCATTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGAAGGTCTGGCCAACCACACCGTGCACGTCTGCTTTTTGATACAATGGTTCAAGAAAGATGTGAACCTACCTCTGAACTTTACACTGCTTTGCTTGCTGCATATTGTCGGAACAATCTCATTGATGATGCATTTTCCACTCTCAATCTCATGAAGACCCTCCCTGGCTGCCAACCTGATGTCTACACTTATAGTATCTTAATCAAGGCTTGTGTTGATGCTTCTCGCTTTGACATAGTCGAATCATTGTATGAGGAAATGGCCGAAAGACTGATAACTCCAAATACAGTGACCCAGAACATAGTATTAAGTGGATATGGCAAGATAGAGAAGTATGACCAAATGGAGAAAGTTCTGATAGGAATGCTAGAGAGCACGACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTAGGTGTGTTTGGTAATAAGGGACAGATTGAAATGATGGAAAGATGGTATGAGAAGTTTCGTAACTTTGGTATTGAGCCAGAAACACGTACATTTAATATTTTGATCGGTGCTTATGGGAAGAAGAGGATGTATGATAAGATGTCTTCTGTGATGGAGTATATGCGCAAATTGCAGTTTCCTTGGACGACATCAACATACAACAACGTGATTGAAGCTTTCGCCGATGTGGGAGATGCAAAGAACATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGAGAGCAGACACCAAGACGTTTTGTTGCCTTATAAATGGATATGCTAATGCAGGTCTCTTCCATAAGGTAATTAGTTCAGTTAAGTTGGCAGGAAAACTCGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATCTGCATGTGCTAAGGCTGAGGATCTGATGGAAATGGACAGAGTATTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATTATGATGGAAGCATATGGAAAAGAAGGCATGAATGATAGAGTTCATTACTTGGAGCTGGAAAAGAAACAGGTGATTGATTATGCTTCTAACAATGAGTGA 1503 42.05 MASFSFSSSLLPSSVSFDHGSTSFFPIFVSSSSSSSSSSSSHPNSRIVRCAFAAPTRKSPVPSTSSSPAKKRHWKQGEFPGITETSTPRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSILIKACVDASRFDIVESLYEEMAERLITPNTVTQNIVLSGYGKIEKYDQMEKVLIGMLESTTCRPDVWTMNIILGVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKLEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMMEAYGKEGMNDRVHYLELEKKQVIDYASNNE 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3420937 3425208 + PI0005809.2 Cmetu11g0485 369217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0485 500 Gene3D Tetratricopeptide repeat domain 85 210 IPR011990 GO:0005515
Cmetu11g0485 500 MobiDBLite consensus disorder prediction 52 92 - -
Cmetu11g0485 500 Pfam PPR repeat family 181 228 IPR002885 -
Cmetu11g0485 500 Pfam PPR repeat family 286 333 IPR002885 -
Cmetu11g0485 500 Pfam PPR repeat family 427 473 IPR002885 -
Cmetu11g0485 500 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Cmetu11g0485 500 NCBIfam pentatricopeptide repeat 325 353 IPR002885 -
Cmetu11g0485 500 NCBIfam pentatricopeptide repeat 183 217 IPR002885 -
Cmetu11g0485 500 NCBIfam pentatricopeptide repeat 431 463 IPR002885 -
Cmetu11g0485 500 NCBIfam pentatricopeptide repeat 360 392 IPR002885 -
Cmetu11g0485 500 NCBIfam pentatricopeptide repeat 148 180 IPR002885 -
Cmetu11g0485 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Cmetu11g0485 500 PANTHER EXPRESSED PROTEIN 37 486 IPR044179 GO:0003729
Cmetu11g0485 500 Pfam PPR repeat 256 280 IPR002885 -
Cmetu11g0485 500 Pfam PPR repeat 148 177 IPR002885 -
Cmetu11g0485 500 Gene3D Tetratricopeptide repeat domain 279 354 IPR011990 GO:0005515
Cmetu11g0485 500 Gene3D Tetratricopeptide repeat domain 211 278 IPR011990 GO:0005515
Cmetu11g0485 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Cmetu11g0485 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Cmetu11g0485 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Cmetu11g0485 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Cmetu11g0485 500 Pfam Pentatricopeptide repeat domain 356 404 IPR002885 -
Cmetu11g0485 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Cmetu11g0485 500 Gene3D Tetratricopeptide repeat domain 355 498 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0485 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1120 Cmetu-Chr1:20800174 Cmetu11g0485 Cmetu-Chr11:3420937 1.60E-57 dispersed
Cmetu01g1300 Cmetu-Chr1:26044980 Cmetu11g0485 Cmetu-Chr11:3420937 6.80E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35