Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0750 ATGGCTTCCTCCTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCTCTCCATGTGGTGATATCGTTGAAGCCAAGATCGTTTGCGATCGTGAAACCGGAAGGTCGAGAGGATTTGGATTCGTGACGTTTTCGGAGGAGGATGCTATGAGAACTGCTATTGAATCAATGAATGGTCATATTCTTGATGGGCGTAATATTACCGTTAACGAGGCGCAGCAAAGAGGTGGAGGAGGCGGTGGTGGTTACAACCGTGGTGGAGGTGGTGGAGGTGGATACGGTGGGCGTCGTGACGGAGGAGGAGGTGGAGGATTCAACCGTGGTGGTGGCGGTTACGGAGGAGGAGGTGGTGGTTACGGAGGAGGTGGTGGTTACGGTGGTGGACGTGATCGTGGTTATGGAGGTGGTGGTGATGGTGGTTCCCGTTACTCCAGGGGAGGCGGTGGCGGTGGATCTGAAGGTGGATGGAGAAATTAG 513 54.0 MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEEDAMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGGGGFNRGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGSEGGWRN 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27405583 27407299 + PI0006797.1 Cmetu11g0750 369482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0750 170 SMART rrm1_1 9 82 IPR000504 GO:0003723
Cmetu11g0750 170 MobiDBLite consensus disorder prediction 131 170 - -
Cmetu11g0750 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Cmetu11g0750 170 Gene3D - 2 125 IPR012677 -
Cmetu11g0750 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Cmetu11g0750 170 CDD RRM2_NsCP33_like 9 84 - -
Cmetu11g0750 170 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Cmetu11g0750 170 PANTHER GEO13361P1-RELATED 6 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0750 K13195 - - csv:101211933 154.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g2288 Cmetu-Chr3:7254191 Cmetu11g0750 Cmetu-Chr11:27405583 1.50E-16 dispersed
Cmetu10g0769 Cmetu-Chr10:21481500 Cmetu11g0750 Cmetu-Chr11:27405583 1.00E-15 dispersed
Cmetu11g0750 Cmetu-Chr11:27405583 Cmetu11g1559 Cmetu-Chr11:21733540 1.10E-12 dispersed
Cmetu11g0750 Cmetu-Chr11:27405583 Cmetu12g0852 Cmetu-Chr12:765086 8.30E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g597 . . . . . Bpe12g00080 . . . . Cma02g00400 Cma20g00852 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00366 . Chy11g00381 . Blo04g00512 Blo13g00553 Bda15g00006 Bda14g00554 Bpe15g00866 . Bma03g00552 . Sed01g0304 Cmo02g00405 Cmo20g00861 . . . . . Cpe05g01257 Bhi10g02015 Tan05g1313 Cmetu11g0750 . Hepe08g1018 . . . . . . . . . . Csa02g01253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004876 2 1 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 2 0 1 1 1 3 1 1 38