Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0801 ATGGCTTCACTTCACAGAAAGCAAGCTAACCATGCTTGCTTTCTTATTGTTCTTTTCCTTTTCTTCTCTCTCCCATCTTTCTCTGTCTCTGTCTCAGAAGCCGAAGCTTCATATCTTACTCGTCGTCAACTATTGGCTCTAAAGGAACACGATGAACTCCCCGATAACTTCAAATACGAACTTGACATTGCTGACACTTTTCCAAATGAGAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTAGCCGTTTATTCCGACCCACAAAACATAACCGCCAATTGGGTTGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTTGATGACCCAAACATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTTTGTGGGATCATTCCTTCTAGCTTCTCCAAGCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGTTTTGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCGAGTACGAAGTACCTCGATCTCAGGTTCAATGACTTTGAAGGAGAAATCCCCTCCACACTCTTCACCAAAGAGTTCGACGCCATCTTCTTAAACAACAACAGATTCAGTTCCCTAATCCCTGAAACCATTGGAAACTCAACCGTCTCAGTCACCATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTCGGCGGCTGTTTCCCACCTGAGATCGGAAACCTTATCAATGTCACGGTCTTCGACGTCAGTGGCAATGGCTTCACAGGCCAATTGCCAGAATCCTTGTCTGGCCTCCAAAATTTGGAGATTTTGGATGTTAGCAACAATGAATTGAGGGGCTCTGTCTCTGGAGGCGTTTGCAAGTTGCCTAAATTGGCCAACTTCACTTTCTCCTTTAATTACTTTGATGGGGAAGATGCAGCGTGTGCTGCATCTAAAGGATCAGGGAAGCTTTTTTATGATGGCCAAAACTGTTTGGCAAATCGACCAGTGCAGAAAGATGCAAATAAATGTAACACTGTCTTGAAGAAGTCAGTGGAATGTGGCAATTGTGGTGGTGGGTCGAGTTCTCCTGGTATCTCACCACCTCCAGTGGCCACTCCACCATCTCCAAGTGAGACCTCTGTTCCATCATCACCACCACTGTCTCCAGTTGAGTCTTCACCACCAACCACGACTCCATCCTCACCACCTACCATTGAAACACCTACTTCATCTCCGGTTGAATCTCCCCTACCACCAGTCTATTCCCCTCCTCCACCATCAGTTCATTCCCCACCACCCCCCGTCCACTCTCCTCCACCCCCTGTTCATTCACCACCACCACCGGTCTCCTTTCCTCCACCACCGGTTCACTCCCCACCACCACCGGTTCACTCCCCACCACCACCGGTTCACTCCCCACCACCACCGGTTCACTCTCCACCACCACCGGTTCACTCTCCACCACCACCGGTTCACTCCCCACCACCACCTGTTCACTCTCCACCACCCCCAGTCCACTCCCCACCACCACCTATCTACTCTCCACCCCCACCGGTCAATTCTCCACCACCACCTGTTTACTCTCCCCCACCACCAGTTTACTCTCCACCTCCACCAGTCCATTCTCCCCCACCACCGGTATACTCTCCACCCCCACCAGTCCATTCTCCCCCCACCTTCCAATCTCCACCACCTCCGACTGCATCTCCTCCTCCTCCCCCTCTTGATTCTTCACCACCACCATCATTCGAAGACGTGATCCTCCCACCAAATATCGGCTTCCAATACGCATCACCGCCTCCACCAATTTTTCCCGGTTACTAA 1899 50.18 MASLHRKQANHACFLIVLFLFFSLPSFSVSVSEAEASYLTRRQLLALKEHDELPDNFKYELDIADTFPNERLKKAYVALQAWKLAVYSDPQNITANWVGADVCSYTGVFCAPALDDPNIEVVAGIDLNHGDIAGYLPPELGLLTDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPLVVLEWPSTKYLDLRFNDFEGEIPSTLFTKEFDAIFLNNNRFSSLIPETIGNSTVSVTIGQMSNLNQILFIGNKLGGCFPPEIGNLINVTVFDVSGNGFTGQLPESLSGLQNLEILDVSNNELRGSVSGGVCKLPKLANFTFSFNYFDGEDAACAASKGSGKLFYDGQNCLANRPVQKDANKCNTVLKKSVECGNCGGGSSSPGISPPPVATPPSPSETSVPSSPPLSPVESSPPTTTPSSPPTIETPTSSPVESPLPPVYSPPPPSVHSPPPPVHSPPPPVHSPPPPVSFPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIYSPPPPVNSPPPPVYSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPTFQSPPPPTASPPPPPLDSSPPPSFEDVILPPNIGFQYASPPPPIFPGY 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3036367 3038402 - PI0017765.1 Cmetu11g0801 369533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0801 632 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 241 335 - -
Cmetu11g0801 632 MobiDBLite consensus disorder prediction 437 611 - -
Cmetu11g0801 632 FunFam Leucine-rich repeat extensin-like protein 1 76 237 - -
Cmetu11g0801 632 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 17 513 - -
Cmetu11g0801 632 Gene3D Ribonuclease Inhibitor 74 238 IPR032675 -
Cmetu11g0801 632 Gene3D Ribonuclease Inhibitor 239 368 IPR032675 -
Cmetu11g0801 632 SUPERFAMILY L domain-like 84 339 - -
Cmetu11g0801 632 MobiDBLite consensus disorder prediction 391 431 - -
Cmetu11g0801 632 MobiDBLite consensus disorder prediction 382 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0801 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0388 Cmetu-Chr1:2453244 Cmetu11g0801 Cmetu-Chr11:3036367 2.70E-43 dispersed
Cmetu02g0637 Cmetu-Chr2:17037072 Cmetu11g0801 Cmetu-Chr11:3036367 3.60E-44 dispersed
Cmetu05g0289 Cmetu-Chr5:864316 Cmetu11g0801 Cmetu-Chr11:3036367 1.90E-40 dispersed
Cmetu06g2561 Cmetu-Chr6:3970243 Cmetu11g0801 Cmetu-Chr11:3036367 3.60E-37 dispersed
Cmetu11g0801 Cmetu-Chr11:3036367 Cmetu11g2551 Cmetu-Chr11:3040384 1.50E-08 tandem
Cmetu11g1491 Cmetu-Chr11:3029455 Cmetu11g0801 Cmetu-Chr11:3036367 8.40E-09 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0289 . 72 241 Leucine-rich Repeat extension Gene Families AT1G62440 72.4 1.3e-44 178.7
Cmetu01g0388 . 42 371 Leucine-rich Repeat extension Gene Families AT1G62440 58.2 1.2e-42 172.2
Cmetu02g0637 . 54 224 Leucine-rich Repeat extension Gene Families AT1G62440 70.2 1.3e-41 168.7
Cmetu02g0637 . 18 397 Leucine-rich Repeat extension Gene Families AT4G13340 76.1 6.5e-70 262.7
Cmetu05g0289 . 37 422 Leucine-rich Repeat extension Gene Families AT4G13340 72.4 1.6e-65 248.1
Cmetu11g0801 . 14 274 Leucine-rich Repeat extension Gene Families AT4G13340 50.6 1.5e-47 188.3
Cmetu01g0388 . 42 372 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 3.9e-43 173.7
Cmetu06g2561 . 39 364 Leucine-rich Repeat extension Gene Families AT4G13340 57.8 2.5e-37 154.5
Cmetu05g0289 . 47 418 Leucine-rich Repeat extension Gene Families AT3G24480 75.5 1.8e-76 283.9
Cmetu02g0637 . 22 391 Leucine-rich Repeat extension Gene Families AT3G24480 76.0 1.3e-74 277.7
Cmetu01g0388 . 42 372 Leucine-rich Repeat extension Gene Families AT3G24480 60.2 4.0e-44 176.4
Cmetu06g2561 . 33 364 Leucine-rich Repeat extension Gene Families AT3G24480 54.1 6.1e-37 152.5
Cmetu06g2561 . 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 69.1 4.4e-61 232.6
Cmetu01g0388 . 39 371 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 7.8e-50 195.3
Cmetu02g0637 . 64 398 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 8.1e-39 158.7
Cmetu06g2561 . 5 365 Leucine-rich Repeat extension Gene Families AT5G25550 62.8 1.6e-41 167.5
Cmetu02g0637 . 38 397 Leucine-rich Repeat extension Gene Families AT5G25550 61.3 8.0e-41 165.2
Cmetu05g0289 . 58 408 Leucine-rich Repeat extension Gene Families AT5G25550 60.8 2.8e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92