Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0821 ATGGACGCCACCATTGACTTCTCTCACAATAGCTACGCTACTCCTAATGGACTGTATTACGGGAGACGTAAGAGACTAAAATTATCTAGTGATGGAAAAGATCTTTCTCGCACTGCCACATTTTCTGCCCAAAAAAGTGACACACCGAGACAAAACAAAATGAAGAACTCAGCAAAAGTAATTGATTACTCAGATCCATTTGCCATTAATAATTTGATTGATGGTTTGGATTGTGGTCAGTTTGGAAGTGTCACTAAAGAGATAGAAGCCCTTGTTTCCCGTAAGATGCAAGTTCTAAGTCCTTACATTGCCAAGTATCCTACACTGTCAAGTATGTTATTTGATCTGGGGAGAAGTAGAGAGTGTAAAGAAGCAATGAACAATCATGCTTCGCAGTTGGTTCATAACCTCATTGATTTGGAGGATGATTCTGCTATTGATGTTCGTTCCAACAATGTTGAGAAATCACGATTGCCTATTGTAATTATTGATTCTGATGAGGAAGATAGCAAAGAACAGAGGGTTATACATCCTTTTCAAGAGGTTGTGCTGCCTAGACCACCAGGACAAAGTTTGTTCAAGGACATTGCAGTTGTGGATCACCGAACTTCCCGGGATCGCCGAGCTTCAAATGGGGAGGAAGCAACTCCTCTTGGTGAAACTATAAACAAGGACAAAGGTGTTTACGTTGGTGTAGAAGGGGATGAGGATGAGGTCAGCGAACAAGCTAACAGTGAGGACGATGGCCTCGGAGATATTTGGAACGATATGCAAATGGCATTAGAATGTTCTAAGGACTTGGATGCCGCTGTAGATTCATCATCTAACCAGCCAACTACAGATGATGTGGACTGTGATCATTCTTTTCTCTTGAAGGATGATCTTGGTTATGTCTGTCGCATTTGTGGAGTTATTGACAGAGGATCGAGACCATTTTTGAGTTTCAGTACAACAAGGTTTGGTAAGAGGAGCACAAGAACATACATATCTGAATCTCGCAACAAAGATTCGGGCAATATTGTTGGAGTTAAAATTTCAGAAGATGATTTGACCGTAACTGAAATTTCTGCACATCCTAGGCATATGAAGCAAATGAAACCCCATCAAATTGAGGGTTTCAATTTTCTTATAAGCAACTTGGTTAGTGACAACCCAGGAGGCTGCATTTTGGCCCACGCTCCCGGATCTGGAAAAACATTTATGATAATCAGTTTCATGCAAAGTTTTTTAGCTAAGTATCCACAGGCTAGACCATTGGTTGTACTTCCCAAAGGAATCTTGGCTACATGGAAAAAGGAGTTTCAGATTTGGCAAGTGGAAGACATTCCACTTTACGATTTCTATTCCGTTAAAGCAGATAATAGGGCTCAACAGCTGACAGTACTGAATCAGTGGGTCGAGCACAAGAGCATTCTGTTCTTAGGATACAAACAATTTTCCACAATAGTCTGCGACGTTGAGACCAGTGCTGCATCAACTGCATGTCAAATATATTGCTCCAGAAGTATTCAATATAGTGAATCTTGTTCGACCAAAGTTTATGAGATCAGAAACTTCTCGACCTATTATCAAACGTATCATGTCAAGAGTAGATATACCTGGTGCGAGGAAGCAGTTCAAAGCTGGTGTGGATGCTGCCTTTATGATCTGGTGGAACACACGCTTCAGAAGGATACAGATTTTAGGAGGAAAGTGAGTGTCATCCATGATTTACGAGATTTTCTCGATGAGCTCCCTGGACTGGTTGACTTCACTGTGGTATTAAATCTCACCTCTAAACAGAAGCATGAAGGTGAAAAAGTCAAAAAGTTTAACAGGAAGTTCAAAATAAGCTCTGCTGGTAGTGCTGTTTATTTGCATCCAAAGTTGAATGTTTTTTCTGTTAATGCTGCTGTTACGGATGATAAAATAGATGAAGTCATTGATAAGATGGATGTTAAAGATGGAGTGAAGACAAAATTTTTTCTTAATATGCTGAATCTGTGTGCTACTACTGGGGAGAAGCTACTGGTTTTCAGCCAATACCTTCTTCCTTTGAAATTCATGGAGAGATTGGTTGAAACCTTTATGATATCTGGTGAAACAACTCCTGAGCAACGGAATGGTCGATGGAACGTTTCAACAACTCGCCCGATGCCCGAGTCTTCTTTGGCTCCATTAAGGCTTGCGGGAGGGCATATCTTTGGTAGGGGCATCACGTATCATCATCTTGGATGTTCATCTCAATCCCTCAGTGACTCGCCAGGCAATGGCCGTGCATTCCGTCCCGGTCAAACAAAGAAAGTCTTTGCATATAGATTGGTGGCTGCCGATTCACCTGAAGAGGGAGATCACAGTACTTGTTTCAAGAAGGAACTGATTGCAAAGATGTGGTTTGAATGGAATGAGTATTGCGGCTATCATGACTTCGAAGTAGAAACTGTCGATGTGAAACAATGTGGCGATAATTTTCTAGAAACTCCACTTCTAGGACAAGATGTCAAAGTTCTGTACAGAAGATAA 2502 41.17 MDATIDFSHNSYATPNGLYYGRRKRLKLSSDGKDLSRTATFSAQKSDTPRQNKMKNSAKVIDYSDPFAINNLIDGLDCGQFGSVTKEIEALVSRKMQVLSPYIAKYPTLSSMLFDLGRSRECKEAMNNHASQLVHNLIDLEDDSAIDVRSNNVEKSRLPIVIIDSDEEDSKEQRVIHPFQEVVLPRPPGQSLFKDIAVVDHRTSRDRRASNGEEATPLGETINKDKGVYVGVEGDEDEVSEQANSEDDGLGDIWNDMQMALECSKDLDAAVDSSSNQPTTDDVDCDHSFLLKDDLGYVCRICGVIDRGSRPFLSFSTTRFGKRSTRTYISESRNKDSGNIVGVKISEDDLTVTEISAHPRHMKQMKPHQIEGFNFLISNLVSDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDFYSVKADNRAQQLTVLNQWVEHKSILFLGYKQFSTIVCDVETSAASTACQIYCSRSIQYSESCSTKVYEIRNFSTYYQTYHVKSRYTWCEEAVQSWCGCCLYDLVEHTLQKDTDFRRKVSVIHDLRDFLDELPGLVDFTVVLNLTSKQKHEGEKVKKFNRKFKISSAGSAVYLHPKLNVFSVNAAVTDDKIDEVIDKMDVKDGVKTKFFLNMLNLCATTGEKLLVFSQYLLPLKFMERLVETFMISGETTPEQRNGRWNVSTTRPMPESSLAPLRLAGGHIFGRGITYHHLGCSSQSLSDSPGNGRAFRPGQTKKVFAYRLVAADSPEEGDHSTCFKKELIAKMWFEWNEYCGYHDFEVETVDVKQCGDNFLETPLLGQDVKVLYRR 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27753355 27761917 + PI0009537.1 Cmetu11g0821 369553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0821 833 Pfam SNF2-related domain 385 454 IPR000330 GO:0005524|GO:0140658
Cmetu11g0821 833 Gene3D - 629 813 IPR027417 -
Cmetu11g0821 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 793 IPR027417 -
Cmetu11g0821 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 485 IPR027417 -
Cmetu11g0821 833 Gene3D - 333 496 IPR038718 -
Cmetu11g0821 833 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 224 491 IPR044567 GO:0080188
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0821 K10875 - - csv:101207775 1325.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g0821 Cmetu-Chr11:27753355 Cmetu10g1861 Cmetu-Chr10:13745342 1.60E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1 . . . . Bpe07g00526 . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . Cpe04g00116 . . . . . . . . Cla02g00501 Cam02g0511 Cec02g0511 Cco02g0519 Clacu02g0513 Cmu02g0509 Cre02g0842 . . . . . . . Cme01g01368 . . . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . . . Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . . Chy01g00763 .
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8745 PF00176 SNF2_N 2.90E-07 CL0023 Cmetu TR