Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0823 ATGGACGACTGTATTAGCAGCGACGAGGACTATTATGACTCCGATCGAGATTCTCTTCATGGTCTTGAGAACGAGGACTCTGAAATTCAGCGGGTTCCTAAAACTCCCTCCACTAAGGTTATTACGAAAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGCAGAGTTATGGACTTGCTATCGTTGAGGGAATACCATGCTCGGACATTACTTATTCATTACCGATGGGATGTTGAGAAATTGTTTGCTGTACTTGTGGAGAAAGGGAAAAGTCACTTGTTTGCTACAGCTGGTGTTACTATGATCGAGAACCGAAGTAATAGTTCCTCTGAGGCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACGAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCCCACAAATGCAATGCAATTTGTGATGAAGCTGTTGTTAGGACTCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGACAACAAAAGAGTCAAGTGGTGTCCAAGTACTCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCTGAAGCTCACTCACCGTGTTCGTGTTTAATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCTGTCGAGAAGAATGGAGGTTGTAACCTCGTCAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAGCATACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAAAAAGCTGAGCGAGCAAAACGGGATTTGTATCGATATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAGTTGAAGGAATCTATACAAGAGAAGATCTCGATTTCAGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAAGAGCCATTTGATCAATATACGAAAGATAAGGTAATGGAGATACGCATGCAAGTCATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCAAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGATAAATATCCACCATCTGACTGTGGTACAAGTGGAGGATTGTCGGAATGTGAACGACTGACTAGCTTGAATTCCGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTACTGGCAACTTTTTTGATCTTAACTTGCCTGCTGAGGTTGTTGATAGAAACTGA 1770 42.43 MDDCISSDEDYYDSDRDSLHGLENEDSEIQRVPKTPSTKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNSSSEASSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRTLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGGLSECERLTSLNSEENGCSSRKRARAEVVTGNFFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27081106 27085765 + PI0005342.1 Cmetu11g0823 369555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0823 589 CDD Rcat_RBR_ARI1-like 273 326 - -
Cmetu11g0823 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 204 IPR013083 -
Cmetu11g0823 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 45 391 IPR031127 GO:0004842|GO:0016567
Cmetu11g0823 589 Pfam Ariadne domain 329 589 IPR045840 -
Cmetu11g0823 589 CDD BRcat_RBR_ANKIB1 197 261 - -
Cmetu11g0823 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cmetu11g0823 589 MobiDBLite consensus disorder prediction 11 28 - -
Cmetu11g0823 589 SMART ibrneu5 190 252 IPR002867 GO:0008270
Cmetu11g0823 589 SMART ibrneu5 260 325 IPR002867 GO:0008270
Cmetu11g0823 589 CDD RING-HC_RBR_TRIAD1 117 170 - -
Cmetu11g0823 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cmetu11g0823 589 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
Cmetu11g0823 589 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 GO:0008270
Cmetu11g0823 589 SUPERFAMILY RING/U-box 191 259 - -
Cmetu11g0823 589 SUPERFAMILY RING/U-box 260 325 - -
Cmetu11g0823 589 Gene3D - 248 496 - -
Cmetu11g0823 589 MobiDBLite consensus disorder prediction 1 28 - -
Cmetu11g0823 589 SUPERFAMILY RING/U-box 114 202 - -
Cmetu11g0823 589 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0823 K11968 - - csv:101205066 1175.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0445 Cmetu-Chr5:13383394 Cmetu11g0823 Cmetu-Chr11:27081106 5.60E-53 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu11g0823 . 164 589 ARIADNE family AT4G34370 72.4 8.4e-184 640.2
Cmetu11g0823 . 58 542 ARIADNE family AT2G16090 77.4 1.3e-225 779.2
Cmetu11g0823 . 28 543 ARIADNE family AT3G27710 61.7 4.3e-185 644.8
Cmetu11g0823 . 44 522 ARIADNE family AT3G27720 54.5 7.5e-144 507.7
Cmetu05g0445 . 1 542 ARIADNE family AT1G05890 63.4 3.2e-218 755.0
Cmetu03g0957 . 61 529 ARIADNE family AT1G05890 73.3 1.5e-215 746.1
Cmetu05g0445 . 20 597 ARIADNE family AT1G65430 73.4 9.5e-260 892.9
Cmetu03g0957 . 16 588 ARIADNE family AT1G65430 67.5 8.4e-240 826.6
Cmetu05g0445 . 9 460 ARIADNE family AT2G31780 53.8 2.0e-148 522.7
Cmetu03g0957 . 57 454 ARIADNE family AT2G31780 57.8 1.3e-142 503.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46