Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0868 ATGGGAGTCGGAGGCCATTTCTGGGATTTACTGAAACCTAACGCTCGAACTGAGGGCTTCGATTTCCTCAGGAACAAGCGGGTCGCCGTCGACCTCTCTTTCTGGATTATCCAGCACGAGACCGCCATTAAATCCACTGTTCGAAGCCCCCATTTGAGGCTCACATTCTTCCGCACCATCACTCTCTTTGCCAAGTTTGGTGCGTTTCCTGTGTTTGTAGTTGATGGAACTCCTTCACCCTTGAAATCCAAGGCAAGGATTGCCAGATTTTTTCGGTTATCTGGTATTGACACTTCTGATCTACCAAAGGTTGAAGATCGTATTTCAGTTCACAGAAATCGCAAGTTTGCAAAATGTGTTAAAGAATGTGTGGAACTGCTTGAGCTATTTGGGGTGCCCGTTTTAGAAGCCAAGGGTGAAGCTGAAGCTCTATGTGCTGAGTTGAATCAAAAAGGCTTTGTGGATGCCTGCATCACAGCTGACAGTGATGCCTTTTTGTTTGGTGCCAAATGTGTAATTAAAAGCATCCATCCCAATTCAAAAGAACCAATTGAATGCTACTTCATGTCAGATATTGAAGCTGCTCTTGGGTTGAGTAGGAACCATTTAATTGCAATCTCTCTCCTGGTTGGAAATGACCATGACTTAAATGGTGTGCAAGGAGTTGGATTGGACACCGCTGTTCGTTTCGTCCAAGATTACACAGATGATGAGATTTTAAATAAATTGTATGAAATAGGCAACGAGGATACTACACTGCTTCAGAGTGGTCTTGAATTGGTAAATAACTATGGACAATCTTCGGAAACGAACTCAAGAAAGATCAAGTGTTCTCACTGTTCCTTCTGTGGTCATCCAGGCAGCAAAAGAGCCCATGTTAAGTTCCCTTGTGAATACTGTGATGTGAGTGATGGCGAGGGTTGTATCAAAAAGCCTGAAGGATTTAAATGCAATTGTTCCTCATGCGATACGGATCGAGAAGAAAAAGAGAGAAAGAAGCAAGAAAATTGGCGATTAAGAGTTTGCAACAAGATTGCTATGGAGCCAAATTTTCCCAGTAGTGAACTTATTCAGATGTACCAGTGTGACAATCACAGTTATTTTAGTGATGATGACCTTGTCTTATCCTGGGGAAGCCCAAGAACCGAAATGCTGGTTGATTTTTTAGTTTTTCATCTACGGTGGGAGCCATCGTTCATCCGTCAGAGGATTCTTCCCATGCTATCCACCATTTTTCTCAGAGAAATGGCTAATAATCCAATTCAAACTTTGCTTTACGGCCAGTACGAGTTCGATTCTATACTTAGAGAGAAAATAAGATATGGACATTCCTATTATGTTGTCAAATGGAAAAAGGCCGTCCCTGCAATTAGCAATGTTATATATGAAGACTCTTCGAGGGAATTTGGCACTGGGCCAGAAGATGCCATTGATGTCGATGAAGCAGTGGATTTGACAGATGAATCTGATTCTCCAAAAATTCATATTCAAGACGGGTGCTCGTTTCTATTGACTGACGAGAATATGGAGCTTGTTGGTGCTGCTTATCCTGAACAGGTTGCCAAATTTTTGCAGGAAGAGGAAATGAAAAGGCAGAAGACCCCAATCACACCGGCTTGTGGGACTAGCGGAAAGTCTGATTCATCGAAAGCGAAAGGAGTCCAGTTAAGTATTACTGAGTTCTACCGTGCAACAAAAACACAACAACAAACAGCAGACACAACAGATTTGACAAATGAGGACGAGGAGACGAGCACGGGAAAGAGGAAAGCATCAAGTTCTTCCACTCTTTCAAAGTCAGTAAGGCGTCGCCTTTTGTTTGATTAG 1827 42.64 MGVGGHFWDLLKPNARTEGFDFLRNKRVAVDLSFWIIQHETAIKSTVRSPHLRLTFFRTITLFAKFGAFPVFVVDGTPSPLKSKARIARFFRLSGIDTSDLPKVEDRISVHRNRKFAKCVKECVELLELFGVPVLEAKGEAEALCAELNQKGFVDACITADSDAFLFGAKCVIKSIHPNSKEPIECYFMSDIEAALGLSRNHLIAISLLVGNDHDLNGVQGVGLDTAVRFVQDYTDDEILNKLYEIGNEDTTLLQSGLELVNNYGQSSETNSRKIKCSHCSFCGHPGSKRAHVKFPCEYCDVSDGEGCIKKPEGFKCNCSSCDTDREEKERKKQENWRLRVCNKIAMEPNFPSSELIQMYQCDNHSYFSDDDLVLSWGSPRTEMLVDFLVFHLRWEPSFIRQRILPMLSTIFLREMANNPIQTLLYGQYEFDSILREKIRYGHSYYVVKWKKAVPAISNVIYEDSSREFGTGPEDAIDVDEAVDLTDESDSPKIHIQDGCSFLLTDENMELVGAAYPEQVAKFLQEEEMKRQKTPITPACGTSGKSDSSKAKGVQLSITEFYRATKTQQQTADTTDLTNEDEETSTGKRKASSSSTLSKSVRRRLLFD 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 105655 109704 - PI0021044.1 Cmetu11g0868 369600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0868 608 MobiDBLite consensus disorder prediction 532 551 - -
Cmetu11g0868 608 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 570 IPR006084 -
Cmetu11g0868 608 FunFam Flap endonuclease GEN-like 1 198 256 - -
Cmetu11g0868 608 CDD PIN_GEN1 2 202 - -
Cmetu11g0868 608 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Cmetu11g0868 608 SMART xpgineu 128 198 IPR006086 GO:0004518
Cmetu11g0868 608 MobiDBLite consensus disorder prediction 565 608 - -
Cmetu11g0868 608 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Cmetu11g0868 608 MobiDBLite consensus disorder prediction 536 551 - -
Cmetu11g0868 608 FunFam Flap endonuclease GEN-like 1 2 197 - -
Cmetu11g0868 608 SMART xpgn3 1 96 IPR006085 GO:0004518
Cmetu11g0868 608 Pfam XPG N-terminal domain 1 86 IPR006085 GO:0004518
Cmetu11g0868 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Cmetu11g0868 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Cmetu11g0868 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Cmetu11g0868 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Cmetu11g0868 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Cmetu11g0868 608 Gene3D - 198 276 - -
Cmetu11g0868 608 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 415 IPR036279 -
Cmetu11g0868 608 Gene3D - 2 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0868 K15338 - - csv:101204819 1140.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2472 Cmetu-Chr4:9226093 Cmetu11g0868 Cmetu-Chr11:105655 2.70E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012886 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 28