Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g0898 ATGCCGAAGGGTTTGAAGAGTAAATGTCAATCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGACCTTCAAGGGATATTCACTAATCTTCAAAATGCAAGGAAGGAGAGTCGTACTACTGACGTTGCTGTCTTGGAGGAGCAAGTCCATCAGATGCTTAAGGAGTGGAATGCTGAGCTTAATGAACCTTCACCTGCATCTTCGTTTGTTGAGGGTAGTCTTGGATCATTCTCACAAGAGTTAGCCCGTCTTCTTGAGCATTGTGATGAGCAAGATGATGCAACTAGTACATTGGCTGAACCAAAGCCTGAACCTGAACTCCATTGCGTTCTTGGCAGCAATCCGTCAAATTTTGTACAGGATGGTTTTTGTATTCCAGAGCTCCAACACGATGGTTTTTTGGGATTTGAGGAGTGCAAAGTGTCTCCTTTAGATCTTCAAAATTATTCATTTTACAAATCAGACATGGCTACTCAGTCTAATTGTCAAAGTTTCAAATTAGATCAAAACTTAGAGCAAAACACGGTGGTCAGTAAGGATGATATATCTACTTTGAATTGCCATATATTGAACTCACATCCAGAGTTTGACTATGGGGTTCTTATTGGGGCATCGGATGTGGGAGACTTTAGTCAGGACACAAAGCCCAGTGTTCTCCCAAATATTGCACCCCCACCATCTGCTTTTATGGGCCCGATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGTCAGGACTATTGCAGTAGCTGTCATTCTGTTCTTGCTATAAACGAAGGCCTTCCTGGAATGATTCCAATATTGCGTCCTGGGGGAATTGGCTTTAAGGATGGTCCTTTGTTTGCTGCTCTTCAGGCAAAGACACAAGCCAAAGAAGTTGGAATACCCATTTGTGATGGTGCTGCAACAAGGAAATCTCCATGGAATGCTCCTGAGCTTTTTGATATTACATTTCTTGAGGGGGAGACAATCAGGGAATGGCTCTACTTCGACAAGCCTAGACGAGCCTTTGAGAGTGGCAATCGAAAGCAAAGGTCATTGCCAGATTATAGTGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGAAGGAGTTTGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAGCCATCAGGCACTCTTGAATGGCATTTGTACGAGTATGATATCACCAATTATGATTCATTCGCATTATATAGGCTGGAACTCAAACATGCTGATACAAAGAAGAGTCCAAAGGGAAAATTGGCAGGGGATCCTCTAGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGCCCTGTTGAGCTTGGACAACAAGTTAAAGGCAAAATGATGACGAAGACAAATAATAAAGTCTGA 1404 42.95 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVLEEQVHQMLKEWNAELNEPSPASSFVEGSLGSFSQELARLLEHCDEQDDATSTLAEPKPEPELHCVLGSNPSNFVQDGFCIPELQHDGFLGFEECKVSPLDLQNYSFYKSDMATQSNCQSFKLDQNLEQNTVVSKDDISTLNCHILNSHPEFDYGVLIGASDVGDFSQDTKPSVLPNIAPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALQAKTQAKEVGIPICDGAATRKSPWNAPELFDITFLEGETIREWLYFDKPRRAFESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSGTLEWHLYEYDITNYDSFALYRLELKHADTKKSPKGKLAGDPLADLQKKMGRLTAEGPVELGQQVKGKMMTKTNNKV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21452158 21455744 + PI0007763.1 Cmetu11g0898 369630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g0898 467 Coils Coil 18 38 - -
Cmetu11g0898 467 PANTHER TRANSCRIPTION FACTOR VOZ1 1 464 IPR039277 GO:0006355|GO:0048578
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g0898 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g0898 Cmetu-Chr11:21452158 Cmetu04g0422 Cmetu-Chr4:1870153 1.70E-145 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0422 . 2 482 VOZ-9 Transcription Factor Family AT1G28520 71.3 8.6e-201 696.8
Cmetu11g0898 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.8 3.7e-135 478.8
Cmetu04g0422 . 27 422 VOZ-9 Transcription Factor Family AT2G42400 50.7 1.1e-104 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8751 None None None None Cmetu TF