Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1017 ATGGGGAAGAAGAAGAAAACTGAGGAAATCAAACCATTAACTGTAGAATTCAAAGTCTCAATGCATTGTAAAGCATGCGAAAGAACTGTGGCCAATGCCATTTCCAAATTCAAAGGGGTGGAGAAGTTTATGACAGACATGGGAAAGCACAAAGTTCTAGTAATGGGAAAGTTTGATCCCCAAAAAGTTATGAAGAAACTAAGAAAAAAGACGGGGAAAGCCGTTGAGATGGTGGTCGACAAAGGGACAACGGCGAAAGATACAACAATTGTCAAGGATTCGGAGCGAACAAACTCGAATAATGCCAATCAGTTGATGATGTTAAATTGTTGCAAGGAAAGTGCTCAGTTGTTGGTTTTGTTCAGTGATGAGAATCCAAATGCATGTTGCATTATGTAA 399 39.35 MGKKKKTEEIKPLTVEFKVSMHCKACERTVANAISKFKGVEKFMTDMGKHKVLVMGKFDPQKVMKKLRKKTGKAVEMVVDKGTTAKDTTIVKDSERTNSNNANQLMMLNCCKESAQLLVLFSDENPNACCIM 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4519049 4519649 + PI0017501.1 Cmetu11g1017 369749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1017 132 Pfam Heavy-metal-associated domain 17 71 IPR006121 GO:0046872
Cmetu11g1017 132 Gene3D - 11 76 - -
Cmetu11g1017 132 CDD HMA 16 76 IPR006121 GO:0046872
Cmetu11g1017 132 SUPERFAMILY HMA, heavy metal-associated domain 14 72 IPR036163 GO:0046872
Cmetu11g1017 132 ProSiteProfiles Heavy-metal-associated domain profile. 12 76 IPR006121 GO:0046872
Cmetu11g1017 132 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 3 92 IPR044577 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1017 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu12g1605 Cmetu-Chr12:1194432 Cmetu11g1017 Cmetu-Chr11:4519049 4.80E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1161 . Blo16g00092 . . . . . . . . . . . . Sed14g1206 . . Bhi03g00834 Tan03g2103 Cmetu11g1017 . Hepe04g1611 . . . . . . . . . . Cone12ag0829 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014897 0 1 0 0 0 0 1 0 0 1 0 0 1 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 0 16