Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1045 ATGTTAATTTCTCTATCTTCTCCCTCCAAAGGCGCCAAAGTGTTGATGGTTGGTGCGGGGGGAATCGGCTGCGAGCTTCTCAAGACTTTGGCTCTCTCGGGGTTTCAGGACATTCATATTATTGACATGGACACCATAGAAGTGAGTAACTTAAACAGACAATTTTTATTCAGAAAATCGCATGTAGGGCTATCAAAGGCTAAGGTTGCTCGGGATGCTGTCTTAAGATTCAGACCTCATGTTAGAATTACCTCTTATCATGCGAATGTCAAGAATCAAGAATTTAATGTAGATTTTTTTAAGCAATTTAGTGTTGTTTTGAATGGACTCGACAACTTAGATGCTAGGCGTCATGTGAATCGTTTGTGCTTGGCAGCTGATGTTCCCTTGGTTGAAAGTGGAACCACTGGATTCCTTGGACAGGTCACAGTCCATGTCAAGGGAAAAACAGAATGCTATGAGTGCCAGCCAAAACCAGCCCCAAAAACATATCCTGTCTGTACCATTACTAGTACTCCGTCAAAGTTTGTTCACTGCATTGTCTGGGCGAAAGATCTACTTTTCACAAAGTTATTTGGAGATAAGAATCAAGAAAATGATCTAAATGTGCGTTCAAGTGATCCTGCAAGTTCATCAGATCATGCTGAAGATATATTTCAACTGAACAAAGATGAAACTATTGAGCACTATGGAAGAAGAGTATTTGATCATGTATTTGGTTACAATATTGAAGTAGCTTTATCTAATGAAGACACTTGGAAAAATCGCAATAAACCTAGGCCTATTTATAGTAGGGATATTCTTCCTGAAGAACCAACTAAGCAGAATGGAAATGCTGACAAAAACTGTGCAACTGATGACCAATCCTTAATATCTGCTATGACATCTCTAGGTATAAAAAACCCCCAGGAGATATGGAGTCTTATGGAAAATTCCAGAATCTTCATTGAGGCTATTAAACTTTTTTTCACGAAAAGGGAAAAGGATGTCGGGAACTTGGTTTTTGATAAAGATGATCAGTTAGCTGTGGAATTTGTCACTGCTGCTGCCAACATAAGAGCTGAATCTTTTGGTATTCCAATGCATAGTCTTTTTGAATCTAAAGGCATTGCTGGAAACATTGTTCATGCTGTTGCAACAACCAATGCAATTATTGCTGGGTTGATTGTGATCGAGGCAATTAAGGTGCTGCAAAATGATGCAAACAATTACAGGATGACATATTGTCTTGAACATCCTTCAAGGAAGATGCTTCTTATGCCAGTGGAACCTTTTGAACCTAACAAATCCTGCTATGTCTGTTCTGAGACACCGCTCTCGCTCGAGATAAATACGCATCATACGAAGCTGCGGGATTTTGTTGAGAAGATAGTTAAGGCCAAGCTTGGGATGAACTTTCCACTTATCATGCATGGCGCTGCCCTTCTTTATGAAGTTGGCGATGATCTTGATGAGGACATGGTGGCGAACTATACTGCTAACCTTGAGAAGGTACTGTCAGAACTTCCTTCACCTGTCGTCAGTGGGACGATATTATCGGTTGAGGATCTCCAACAAGAGCTTAGCTGCAGTATCAACATCAAACACAGAGATGAATTCGATGAGGAGAAGGAACCAGATGGTATGGTTCTATCTGGATGGCAGCAAACCCCACTGGAAAAGGGTGAGTGCAGCAAAACTTTGGGCAACGGAGAAAGCACCTCTAAGACATTGCCCTCTGCTTCGGACGGTGATAAGTATGATGATTCAGACATGGTTGCATCAGGAAGGAAAAGAAAACTGGACGAGGCTGTCAATATATCAGGTGAAGCTAATAGCTCGAAGAAACCTGAAGTGCTGGACGACGACGACGACGATCTTGTCATGCTCAATGATGGGGATGATGGGGACGCAGCTGTTAACAAGAAGAAAAGATTGCAATAG 1923 41.45 MLISLSSPSKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRKSHVGLSKAKVARDAVLRFRPHVRITSYHANVKNQEFNVDFFKQFSVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFTKLFGDKNQENDLNVRSSDPASSSDHAEDIFQLNKDETIEHYGRRVFDHVFGYNIEVALSNEDTWKNRNKPRPIYSRDILPEEPTKQNGNADKNCATDDQSLISAMTSLGIKNPQEIWSLMENSRIFIEAIKLFFTKREKDVGNLVFDKDDQLAVEFVTAAANIRAESFGIPMHSLFESKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDANNYRMTYCLEHPSRKMLLMPVEPFEPNKSCYVCSETPLSLEINTHHTKLRDFVEKIVKAKLGMNFPLIMHGAALLYEVGDDLDEDMVANYTANLEKVLSELPSPVVSGTILSVEDLQQELSCSINIKHRDEFDEEKEPDGMVLSGWQQTPLEKGECSKTLGNGESTSKTLPSASDGDKYDDSDMVASGRKRKLDEAVNISGEANSSKKPEVLDDDDDDLVMLNDGDDGDAAVNKKKRLQ 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27736767 27746797 - PI0022821.1 Cmetu11g1045 369777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1045 640 CDD Uba2_SUMO 13 434 - -
Cmetu11g1045 640 MobiDBLite consensus disorder prediction 575 598 - -
Cmetu11g1045 640 PIRSF SUMO_E1B 5 616 IPR030661 GO:0016925|GO:0019948
Cmetu11g1045 640 MobiDBLite consensus disorder prediction 546 640 - -
Cmetu11g1045 640 FunFam SUMO-activating enzyme subunit 162 373 - -
Cmetu11g1045 640 FunFam SUMO-activating enzyme subunit 2 3 107 - -
Cmetu11g1045 640 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 11 491 IPR035985 GO:0008641
Cmetu11g1045 640 MobiDBLite consensus disorder prediction 551 574 - -
Cmetu11g1045 640 Gene3D - 7 107 IPR042449 -
Cmetu11g1045 640 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 12 494 IPR045886 -
Cmetu11g1045 640 FunFam SUMO-activating enzyme subunit 435 587 - -
Cmetu11g1045 640 FunFam SUMO-activating enzyme subunit 376 409 - -
Cmetu11g1045 640 Pfam Ubiquitin-activating enzyme, SCCH domain 314 368 IPR019572 -
Cmetu11g1045 640 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 162 373 IPR023318 -
Cmetu11g1045 640 Pfam ThiF family 12 432 IPR000594 -
Cmetu11g1045 640 FunFam SUMO-activating enzyme subunit 2 9 184 - -
Cmetu11g1045 640 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 441 533 IPR028077 -
Cmetu11g1045 640 MobiDBLite consensus disorder prediction 263 282 - -
Cmetu11g1045 640 Gene3D - 435 624 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1045 K10685 - - csv:101205378 1222.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g2420 Cmetu-Chr6:4330573 Cmetu11g1045 Cmetu-Chr11:27736767 6.80E-35 dispersed
Cmetu11g1045 Cmetu-Chr11:27736767 Cmetu11g1519 Cmetu-Chr11:7421762 2.70E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g336 Blo02g00838 Blo15g00710 . Bda08g00946 Bpe07g00415 . Bma05g00435 Bma12g00496 . . Cma02g00376 Cma20g00825 Car02g00243 Car20g00711 . . . . . . . . . . . . . . . . . . . . . Lsi10g00399 . Chy11g00352 . . . . . . . . . Sed01g0281 Cmo02g00383 Cmo20g00836 . . . . Cpe16g00263 Cpe05g01278 Bhi10g01969 Tan05g1264 Cmetu11g1045 . Hepe08g0992 . . . . . . . . . . Csa02g01289 . Cme11g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004157 1 1 2 4 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 44