Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1068 ATGGCCGACGGCAAGTTCGATCTCCCCGACGATCTTCTTTCCTCTCGCCCTTCCGATCACTCCTGGACCCCCAAAGCTTCTGGAGGGAATGATGAGGAGAAGGTGCTCTCGGGTTTCCTTGATGAGTCTAAAGACTCTGTGGCTTCAGAGAACAGCATACCTTTGTCCCCTCAATGGCTATATGCCAAACCAAGTGAAACTAAGGAAGTGCGTGCTCCAACACCAGTGTCTCTTGCTAACTCAACTGATCTCAATCAGAAAGAGGGTTGGCGCCCTGATGGGTCTGAGGACAAGAAGGATTGGAGGAAGAGTACTTCTGAAAATGAAAGTGGTCGCCGTTGGAGAGAGGAAGAGCGAGAAACTGGCTTACTTAGTGGTCGCCGCAGGAAAACTGAGAGACGCATGGATAACATGTCAACTAAGGAGACAATGGAGGGTAGAGTCCTCCCTAATTCAGACAGATGGCATGATGGTCGCACTTCTGGGCATGATAGTCGCACTTCTGGTCATGACAGTCGTACTTCTGGACATGATAACCGTACTTCTGGGCATGACAGTCGTACTTCTAGTCATGATGCACGACGTGACAACAAATGGACGTTGAGATGGGGACCCGATGACAAAGAAAAGGAATCACGGATGGACAAGCGATCAGATGCTGATAAGGAAGATGTTCGCAGTGACAGTCAATCAGTGAGTGGCAATCGCCCTGCTTCTGAGCGTGACTCTGAATCACGTGATAAATGGAGGCCTCGCCATAGGATGGAAAGCCATTCTGTTGGCTCAACTTCCTCTCGCGCTGCACCTGGTTTTTCACTTGAGAGAGGGCGGGGAGATGGGGGGTCTAATTTGGGATTTACAATTGGAAGAGGAAGAGGAAATACCATTGGGAGATCGTCTACTGGTCTCACTGGAGTACCACACTTGGATAAGATTGAAATTGTTCCTGGGAAACCAAGATACTCATCTCATGCTTTTTGTTACCCTAGGGGTAAGCTTCTTGACATATATAGGAGGCAGAAATCTGATCCATCGTTCTCGGATATGCCTGATGATATGGAAGAATCGCAGCCTTTGACTCAACCTAGTGTTGTAGAACCATTGGCTTTTGTTTCTCCTGATGCTGAAGAGGAGAGTACCCTTGGTGACATATGGAAGGGGAAAATCACCAGTAGCGGGGTTGTTTACAATTCACATATGAAGGGGAAGCTTACTGAATCTGTTTTAGGAGATGTAGACTCCATAGATGGATATCAGGCTGCGCGGGATTCGACTTTAGAGTCCGAGAATGTAGCAGAAACTCGGATTGAAGATATTCCTAATGTGGGTCATGAAGTTACAAATGATGAAGCATTCCAAGATGCTATTGACGGGAGCATTTGGAGTCATCCTTCAATGAGAGATGTCCTAGATGGAAAATATGTCAGCCATAAAGAAGAGGAAAAAAGGTCTAGTGTCATTTCTATGCCAAACTCTCGTGGATTGGCCCACACAGTTTCTACAGCAGCCTCCCAACGTGTGATGGAGATTGGCAGTGGGCACCCTGGTACTCAGCTAAATGCTGGTGTGAATGGGCGAGCAGATTCTGATCATAAAAGGCCTCAGAACTTTGATGAAATTGAGTTTGCCAATTCGTTTGATGTCAGATCCAAGCTTTCTGATGATCCTAGTTCTATTTTCTTTATTCCCTTCTCTGAGCAAAATCCAAATAAAAGTTCTGATGTGAAATCCGAGGAGCTGAGTTTGTTCTATCTTGATCCTCAAGGGGTTATACAGGGGCCCTTTATTGGGGCTGACATCATCTTGTGGTATGAACAAGGTTTCTTTGGGTTAGACCTGCCTGTTCGGTTGGCAGATGCCCCTGAGTCCCCATTTTGTGAGTTAGGGGAGGTTATGCCACATTTGAAAGTTAGAGAGGGAAGTGTTGATTGTGCTGATGCAAAATCTCTTTCAGGCCAGTCTGGTGCCTCAGGAGGAATAATGGAGACCAGTTTACCTTCTAAGCATCCGGCACTTGATATGAATGATGCATCTACAACAAATGAGGTTCATCGAACACTTGCTGAATTACATAGCCTATCCAATCAACACATTGGATCTGGAATGTCTGAAACTGAAGCACCATTTCAATTGCATTCCAAGGGTCAAAGCTTTCATGATGTTGTTGCTCAGGATGAAGAAATTGTGTTTTCTGGAAGACCTGGAAACGATGGTTACCCATTTCCCAACTCTCCTGGGGTGCTGCCTATGGTGAATTCTATCAGCCAGCCTTCTCTTTTGAATGAGTTAACTGATCGCAGCCTGCCTGTTCAGAATGAAAATAAGTTGCACCCTTTTGGATTGCTGTGGTCTGAGCTGGAAGGTACAAATATGAAACCAGTTGAAGTCACAAATTCGAAACATACCAAGTCAGTTAATAACATGCCTTCAAGCATGGTAAGAACCACACCGTTAGTTGGGAAGCCGGAAGCATCTCTTAATGCAGAGACTTGGCTTGATGTTTACAGAAGAAGTATGCATTCTGACCAGGGTGTATACCAGGAGGCCAATGTTGCTCATTCCTTGCCACATATAGAACAAGAATCTAATAGGTTTGATTTGGCAGATCAACTCATGTCTCATCAATATCATCAGGCACTCCAACAGCGGAATTTGTTGTCTCACACTAACGAAGCTACTTTAGATCATCATATGCAACAACAGAATCTTATTCACCAGCAGCAGCTGTTGGCTAATAGAAGTACACCCGATCTTGATCATTTCTTGAACTTGCAGATGCAACAGCAACAACAACGGCAGCTGCAGTTACAGCATCAGTTACAGCAGCAGCAGTTGCAGCAGCAGCAAAAGCTTTTGCAGGAACAACATCAATCTCAAGTCCAGCAGGCATTGCTTGAACAGTTGTTGCGTCGTCAAATGCATGATTCAGGGCTTGGGCAGTCACATATTGATCCAATTAGAGCCAATAATGCTCTTGATCAGGTGTTAATGGAGCAACGTCTTTTACATGAACTACAGCAGCAACAATCTCATCATCAACAAAGATCTGTTGATCCATCTTTTGAGCAGCTTATTAAAGCAAAGTTTGGTCACTTGCCACCACACCAAGAACAAAGAGATTTGTCTGAATTATTATCTCGGGTTCAGCATGGACACATTCAATCATTGGATAATCAACTTGCCCACCAGGATGTGCTACAGTCGAGACAGTTGTCTATGGCATTAAGGCAGAGGGCCAGTATGGAGGACAAGAGACATGTTGGTGGTCCTATCTGGCCAGAGGATGAGGCCGATCAGCAGTTTTTCAGAGGACATGCTGGCACACAACGTTTACCGACTTCAGGGTTTGAATTATACCAGCATCAGCAGAGGCAAGCTCATGCAGACCAGCTGAATCACCTTGAGCGCAATCTTTCCTTTCAAGATCGGTTTAGGCTAGGTCTTTATGAGCCTGCTTCACTTCCACTCGAGAGATCAATATCCTATCCTGACGTTGCTCAGGGGATGAATCTGGATGTAGTTAATGCCATGGCTCGTGCTCGGGCTTTAGAATTGCAAGAATCCAGTGCACATAATCCACCTGGTGGTCAATTGGTGGGGCAATATGCACCCGGTGCCATTCCACAGAATCATCATCACTCTCTAGTCAGTAACCAGTTTCATGTTTCACATTTTGATGGAACTGAAGGCAACTGGTCTGAGAAAAATGAGCGACTTGGAAATGAATGGATGGAGTCTCGGATGGAGTCTCGAATGCAACAAATGCATATCAATATCAGTGCTGAGCAACAGAAAAGGGAGTTGGAGGCTAAAATGGTTTCTGAAGATCCAACTTTATGGATGTCAGATGGACTTAATGATGAGAAGTCAAAGCAGTTATTAATGGACCTACTCAATCAGAAATCTGTTCATCAACCCACAGAACCCCTGGATGTAGGAAGTGGAGCATCTTTCAATAGAGGATCATCTGGCCTCTATTCTGGATCAGGCTCTCTTGAACAGTCGTTCATACATCATTCAGGCAAGGAAAGAGGTCTGAACAACACATTGCCAGTGGGGTCTTATGGTTCTAATGCTTATGAACCACTGCAAGATGAGCATCCTGGCAGCTTGAGCTTGACAAGCAATGAGAAGGTCCCGTACAGGTCGGATTCTGTATCTGCTGTCAAGGGAGCATCAATTTTGGCTGGTCTTAAAGCCAATGGTGCGATTAACAGCTCTAGTTCTAGCATGGCTGCCACTGGTAACCTTTCTATGAATAGAGACGTCTTAGAGGTGGAGGGTAGGGCACGAGGATTGAAAGGTGAGGGTTTGGTGAAAACTCAAGCCTTTCAAATTCAAGAAAGCATGCTTGACCAAGTGGCATCTGCTGATCGTGGGGAATTTGCAATGGATACTCATAACCTTAGTCGGCATTCGTCTCTTGGTTCTGCTGGCTTTCACAATGAAAAGATTGCTAATACGTTTCCAGAAGAGGTTGCTAAAGACCCGGTGACCATTCACAACAAAGATAATACTTCATTGAAACGCCCTCCTGTCTCACGCACTTTGGCATCCCAGGATGGATTGTCTGTCCTGATTCCAGATCCGGTCGTTAGAGGGAAGAACTCAGATGGTGGAAGACCGGACCCAACTAGTATCTTGGTGAACCAAGAAAACATGGCAGCCATGAAGAAAGAGATGCGTTTCCGGCGCTCTTCTTCTTGTAGTGACAGTGACGTGTCAGAGACTTCTTTTATTGATATGCTGAAGAAGACAGCTCCACAAGAATCCCATTTGGCAACGGCGGGAGTTCCAGAGCCATCTGATGGAATGCAGGGAGGGAAAGGTGGGAAAAAGAAAGGGAAGAAGGGGAGACAGATAGATCCCGCTCTTCTCGGATTCAAAGTCACCAGCAACCGAATTATGATGGGTGAAATCCAACGCTTAGACGATTGA 4938 45.52 MADGKFDLPDDLLSSRPSDHSWTPKASGGNDEEKVLSGFLDESKDSVASENSIPLSPQWLYAKPSETKEVRAPTPVSLANSTDLNQKEGWRPDGSEDKKDWRKSTSENESGRRWREEERETGLLSGRRRKTERRMDNMSTKETMEGRVLPNSDRWHDGRTSGHDSRTSGHDSRTSGHDNRTSGHDSRTSSHDARRDNKWTLRWGPDDKEKESRMDKRSDADKEDVRSDSQSVSGNRPASERDSESRDKWRPRHRMESHSVGSTSSRAAPGFSLERGRGDGGSNLGFTIGRGRGNTIGRSSTGLTGVPHLDKIEIVPGKPRYSSHAFCYPRGKLLDIYRRQKSDPSFSDMPDDMEESQPLTQPSVVEPLAFVSPDAEEESTLGDIWKGKITSSGVVYNSHMKGKLTESVLGDVDSIDGYQAARDSTLESENVAETRIEDIPNVGHEVTNDEAFQDAIDGSIWSHPSMRDVLDGKYVSHKEEEKRSSVISMPNSRGLAHTVSTAASQRVMEIGSGHPGTQLNAGVNGRADSDHKRPQNFDEIEFANSFDVRSKLSDDPSSIFFIPFSEQNPNKSSDVKSEELSLFYLDPQGVIQGPFIGADIILWYEQGFFGLDLPVRLADAPESPFCELGEVMPHLKVREGSVDCADAKSLSGQSGASGGIMETSLPSKHPALDMNDASTTNEVHRTLAELHSLSNQHIGSGMSETEAPFQLHSKGQSFHDVVAQDEEIVFSGRPGNDGYPFPNSPGVLPMVNSISQPSLLNELTDRSLPVQNENKLHPFGLLWSELEGTNMKPVEVTNSKHTKSVNNMPSSMVRTTPLVGKPEASLNAETWLDVYRRSMHSDQGVYQEANVAHSLPHIEQESNRFDLADQLMSHQYHQALQQRNLLSHTNEATLDHHMQQQNLIHQQQLLANRSTPDLDHFLNLQMQQQQQRQLQLQHQLQQQQLQQQQKLLQEQHQSQVQQALLEQLLRRQMHDSGLGQSHIDPIRANNALDQVLMEQRLLHELQQQQSHHQQRSVDPSFEQLIKAKFGHLPPHQEQRDLSELLSRVQHGHIQSLDNQLAHQDVLQSRQLSMALRQRASMEDKRHVGGPIWPEDEADQQFFRGHAGTQRLPTSGFELYQHQQRQAHADQLNHLERNLSFQDRFRLGLYEPASLPLERSISYPDVAQGMNLDVVNAMARARALELQESSAHNPPGGQLVGQYAPGAIPQNHHHSLVSNQFHVSHFDGTEGNWSEKNERLGNEWMESRMESRMQQMHINISAEQQKRELEAKMVSEDPTLWMSDGLNDEKSKQLLMDLLNQKSVHQPTEPLDVGSGASFNRGSSGLYSGSGSLEQSFIHHSGKERGLNNTLPVGSYGSNAYEPLQDEHPGSLSLTSNEKVPYRSDSVSAVKGASILAGLKANGAINSSSSSMAATGNLSMNRDVLEVEGRARGLKGEGLVKTQAFQIQESMLDQVASADRGEFAMDTHNLSRHSSLGSAGFHNEKIANTFPEEVAKDPVTIHNKDNTSLKRPPVSRTLASQDGLSVLIPDPVVRGKNSDGGRPDPTSILVNQENMAAMKKEMRFRRSSSCSDSDVSETSFIDMLKKTAPQESHLATAGVPEPSDGMQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRLDD 1645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1593502 1602443 + PI0012086.1 Cmetu11g1068 369800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1068 1645 ProSiteProfiles GYF domain profile. 579 629 IPR003169 GO:0005515
Cmetu11g1068 1645 SUPERFAMILY GYF domain 576 635 IPR035445 -
Cmetu11g1068 1645 CDD GYF 579 636 IPR003169 GO:0005515
Cmetu11g1068 1645 MobiDBLite consensus disorder prediction 1590 1621 - -
Cmetu11g1068 1645 MobiDBLite consensus disorder prediction 1 283 - -
Cmetu11g1068 1645 SMART gyf_5 580 634 IPR003169 GO:0005515
Cmetu11g1068 1645 Gene3D - 566 649 IPR035445 -
Cmetu11g1068 1645 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1645 - -
Cmetu11g1068 1645 MobiDBLite consensus disorder prediction 239 259 - -
Cmetu11g1068 1645 MobiDBLite consensus disorder prediction 74 88 - -
Cmetu11g1068 1645 Coils Coil 988 1008 - -
Cmetu11g1068 1645 Pfam GYF domain 583 620 IPR003169 GO:0005515
Cmetu11g1068 1645 MobiDBLite consensus disorder prediction 342 361 - -
Cmetu11g1068 1645 Coils Coil 924 946 - -
Cmetu11g1068 1645 MobiDBLite consensus disorder prediction 89 229 - -
Cmetu11g1068 1645 MobiDBLite consensus disorder prediction 44 58 - -
Cmetu11g1068 1645 MobiDBLite consensus disorder prediction 1528 1547 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1068 K18730 - - csv:101204211 2961.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g2269 Cmetu-Chr3:1779992 Cmetu11g1068 Cmetu-Chr11:1593502 2.80E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1305 . . . Bda11g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01812 Cme11g02345 . . . Bda11g00384 . . . Bma06g01339 Sed09g0359 . . . . . . Cpe17g00925 . Bhi12g02417 Tan06g1477 Cmetu11g1068 . . . . . . . . . . . Lsi09g01748 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44