Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1138 ATGAAAGCTCATCGTTTGAGCTTCTTCTTCATTTCGTTTCTATCTTTATTCTTTACATTCTTTACAGCCACAGCCTTAACGTTTCATTCCCGCATTTCCTACCGGAGAATTCTGCATCAGCCGCTCTTTCCTATAGGCTCTGAGCCACCACCGGAGATTGAATTGTCTCCACCTCCACCACCGCCGCCGGATTCTCCCTCTGATGATCAACCATTTTTCCATGAGATACCGACGAGTCCAGATCAGAGTCAACCGGCTCCGTCCTCCAGTAATGGAACTATGCCTATCCCGGCTGCTACGGCGCAACCGTCTAAGCCTACCAAGACTGTTGCGATTGCCATTTCGGTTGGGATTGTGACTTTGGGGATGCTTTCGGCTCTTGCGTTCTTTTTGTATCGTCATCGTGCGAAGCATCCCGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATAATCCGGAGAGATTTGTGGAGGATTCGAGAGCGCCTCCTTCGAGTTTTTTTTATATTGGAACTGTTGAGCCGAGTCAGAGCTCTGTTGTGGAGCAGAATGGTGGTAATGGTGCGAATAGTTCGCCTTATCGGAAGCTGAATTCGATTAAGAGGTCGGATCGGTATCGTCCGAGTCCGGAGTTGCAGCCACTACCGCCTTTGCCTAAGCCACCGGTGGCTATGTCGCCTCCGGCTTTGTCATCTTCTGATGAGGAAAGTCTGGATACGGCATTTCATACTCCGCAATGCTCGTCGATTGTTAGTCATGAGGATGGCTATTTTTCACCGGCTTCTCGTCGGAGCAATTCGGTTAAGAGCTGTTCAACGGCGAGTTATAAGAATGACCATACGAATTCCAATCCTCCTCCTCCCATTCCTCATTCCAAAAGAACCTCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGTAATTCGTCTCAGCCTCAGCCACCGCCACCGCCACCGCCTCCTCCTCCACCGCGTCCGTTTGATGATTTTCGTGATACTCCGAATTCGAACGAAACAGTGCCTTTCTCTGCCACCAGACCTAGATTTTCGAAGCCTCCTCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATTCAGCTGCATTTCCTCAAGTTCCGCAACCTGCTACAGCTCCACCTCCGCCTCCGCCGCCTCCTCCCCACCTCTACCTCCACGGCCTCACTCCTCCAGACTCCTCTAAATCACAATCCTACTCAACAGCAAGATCAAACTCATCTCCGAAATCCACACCAAGTTCTACGACAACAAACTCTGCTAAAGAAGACGCTGTCCCGAGGACTAATTCTATGGAGAGGTTGGAAGCAGAAGATGCAGATGGTGCTAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACATCAGACCGAGCTACAGTTTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGATATGATGGAGACACTTTTCGGCTTCAATTCTGCGAATTCTGTTCCCAAAGAAGCCACGAGAAAGTCCGTTCTTCCCCCGTTGAGAAGGAAACAGGGTAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTTAGAGAGTACTGTGGTGATGCTTCAAAATTAGGGACTGCCGAAAGATTTCTCAAGGCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTCGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTGAGAAAATCTTTCCAAACCCTTGAGGGTGCAAGTGAAGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTCAAGACGGGAAATAGGATGAATGTTGGTACGAATCGCGGTGACGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTAGATATAAAGGGAACAGATGGAAAAACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTGCTGATTCAACTAATGACAACCTTCAACCTCGTTCACAAGCTAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCACCAATGTCAAAAAAGCAGCAGGGATGGACTCAGATGTCTTGAGCAGTTATGTCACAAAGCTCGAAATGGGGCTCGAAAAAGTAAGGTTGGTCTTACAATTCGAAAAGCCAGGAATGCAGGGAAAATTCTTCAACTCAATGAAAACATTCTTGAAAGAGGCAGAGGAGGAAATAGTCAGGATCAAGGCTGACGAAAGACAAGCTTTATCGCTCGTGAAAGCAGTCACGGAGTATTTCCATGGCGATGCAGCTAAGGAAGAAGCCCATCCCTTCCGAATCTTCATGATCGTTCGGGATTTCCTAACCATACTCGATCAAGTATGCAAAGAAGTCGGGAGAATGCAGGACGGAGTAATGGTCGGTGCTGCTAGATCTTTTCGAATATCTGCTACAGCCTCACTCCCAGTCCTCAGCAGGTATAATGTCAGACACGACAGAAGCTCCGACGAGGATAGCTCATCTCCATGA 2577 47.11 MKAHRLSFFFISFLSLFFTFFTATALTFHSRISYRRILHQPLFPIGSEPPPEIELSPPPPPPPDSPSDDQPFFHEIPTSPDQSQPAPSSSNGTMPIPAATAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNNPERFVEDSRAPPSSFFYIGTVEPSQSSVVEQNGGNGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVAMSPPALSSSDEESLDTAFHTPQCSSIVSHEDGYFSPASRRSNSVKSCSTASYKNDHTNSNPPPPIPHSKRTSPKSRFSVSSTKRNSSQPQPPPPPPPPPPPRPFDDFRDTPNSNETVPFSATRPRFSKPPPPPNLALLQTISNSAAFPQVPQPATAPPPPPPPPPHLYLHGLTPPDSSKSQSYSTARSNSSPKSTPSSTTTNSAKEDAVPRTNSMERLEAEDADGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPLRRKQGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDASKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDNLQPRSQAKIEDEFRKQGLQVVAGLSRDLTNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFEKPGMQGKFFNSMKTFLKEAEEEIVRIKADERQALSLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28793854 28797824 + PI0029007.1 Cmetu11g1138 369870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 397 432 - -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 76 104 - -
Cmetu11g1138 858 Gene3D Formin, FH2 domain 451 822 IPR042201 -
Cmetu11g1138 858 PANTHER FORMIN-RELATED 515 852 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmetu11g1138 858 ProSiteProfiles Formin homology-2 (FH2) domain profile. 396 833 IPR015425 -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 177 196 - -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 177 452 - -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 209 225 - -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 48 68 - -
Cmetu11g1138 858 SUPERFAMILY Formin homology 2 domain (FH2 domain) 314 818 - -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 140 159 - -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 48 104 - -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 294 309 - -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 433 452 - -
Cmetu11g1138 858 SMART it6_source 443 822 IPR015425 -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 310 329 - -
Cmetu11g1138 858 Pfam Formin Homology 2 Domain 515 807 IPR015425 -
Cmetu11g1138 858 Pfam Formin Homology 2 Domain 447 503 IPR015425 -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 374 393 - -
Cmetu11g1138 858 Coils Coil 754 774 - -
Cmetu11g1138 858 MobiDBLite consensus disorder prediction 229 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1138 K28090 - - csv:101208011 1342.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0328 Cmetu-Chr2:812140 Cmetu11g1138 Cmetu-Chr11:28793854 9.60E-97 dispersed
Cmetu04g2000 Cmetu-Chr4:16988094 Cmetu11g1138 Cmetu-Chr11:28793854 7.60E-48 dispersed
Cmetu08g1847 Cmetu-Chr8:20206507 Cmetu11g1138 Cmetu-Chr11:28793854 2.70E-34 dispersed
Cmetu11g1138 Cmetu-Chr11:28793854 Cmetu11g1515 Cmetu-Chr11:23572744 1.10E-94 dispersed
Cmetu11g1138 Cmetu-Chr11:28793854 Cmetu10g1209 Cmetu-Chr10:10688581 1.10E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g937 Blo04g01082 Blo16g00351 . . . Bpe15g00301 . . . . Cma02g00531 . Car02g00366 . . . . . . . . . . . Cla01g01710 Cam01g1796 Cec04g1443 Cco04g1507 Clacu01g1821 Cmu01g1699 Cre04g1372 Cone6ag1454 Cone9ag1375 . . Lsi01g00902 . . Cme08g00643 . . Bda11g01477 . Bpe13g00127 . Bma03g01142 Bma06g00347 Sed14g0912 Cmo02g00543 . . . . . . Cpe05g01150 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . .
Vvi12g553 Blo02g00105 Blo15g00519 Bda06g00343 Bda13g00633 . . . . . . Cma02g00145 Cma20g00639 Car02g00124 Car20g00517 . . . . . . . . . . . . . . . . . . Cone10ag1297 . Cone12ag1403 . . . . . . . . Bpe14g00693 Bpe07g00592 Bma02g01338 Bma12g00784 Sed14g0912 Cmo02g00150 . . . . . Cpe16g00458 Cpe05g01457 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . Cme11g00755
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1209 . 465 941 FH2 protein (formin) Gene Family AT3G25500 65.8 1.1e-163 574.7
Cmetu11g1138 . 413 838 FH2 protein (formin) Gene Family AT3G25500 53.9 3.5e-122 436.8
Cmetu02g0328 . 500 893 FH2 protein (formin) Gene Family AT3G25500 51.5 6.8e-102 369.4
Cmetu04g2000 . 624 833 FH2 protein (formin) Gene Family AT2G43800 64.8 3.0e-66 250.8
Cmetu11g1515 . 320 621 FH2 protein (formin) Gene Family AT4G15200 56.5 2.0e-53 207.2
Cmetu11g1515 . 475 938 FH2 protein (formin) Gene Family AT5G54650 63.9 2.5e-161 566.6
Cmetu11g1138 . 33 857 FH2 protein (formin) Gene Family AT5G67470 53.9 1.1e-212 737.3
Cmetu10g1209 . 503 937 FH2 protein (formin) Gene Family AT5G67470 61.0 3.1e-127 453.4
Cmetu02g0328 . 500 895 FH2 protein (formin) Gene Family AT5G67470 51.1 5.6e-105 379.4
Cmetu04g2000 . 611 825 FH2 protein (formin) Gene Family AT5G67470 61.5 5.7e-65 246.5
Cmetu10g0982 . 338 830 FH2 protein (formin) Gene Family AT1G59910 51.4 6.6e-125 445.7
Cmetu04g2000 . 651 833 FH2 protein (formin) Gene Family AT5G48360 54.1 1.3e-46 185.3
Cmetu04g2000 . 623 825 FH2 protein (formin) Gene Family AT3G07540 50.2 7.7e-48 189.5
Cmetu04g2809 . 942 1253 FH2 protein (formin) Gene Family AT1G42980 51.4 7.4e-70 261.2
Cmetu04g2809 . 1 1260 FH2 protein (formin) Gene Family AT1G31810 68.4 0.0e+00 1203.7
Cmetu02g1238 . 915 1222 FH2 protein (formin) Gene Family AT5G07650 70.8 8.1e-116 415.2
Cmetu07g0822 . 1067 1389 FH2 protein (formin) Gene Family AT5G07650 64.7 3.5e-111 399.8
Cmetu04g2809 . 926 1257 FH2 protein (formin) Gene Family AT5G07650 59.9 1.3e-108 391.3
Cmetu02g1753 . 919 1231 FH2 protein (formin) Gene Family AT5G07650 61.4 2.4e-104 377.1
Cmetu12g0477 . 984 1241 FH2 protein (formin) Gene Family AT5G07650 71.7 1.6e-100 364.4
Cmetu02g1238 . 842 1215 FH2 protein (formin) Gene Family AT5G07770 65.3 4.9e-126 448.7
Cmetu07g0822 . 992 1381 FH2 protein (formin) Gene Family AT5G07770 59.3 6.9e-120 428.3
Cmetu04g2809 . 862 1251 FH2 protein (formin) Gene Family AT5G07770 56.0 2.1e-116 416.8
Cmetu02g1753 . 842 1223 FH2 protein (formin) Gene Family AT5G07770 56.7 4.0e-112 402.5
Cmetu12g0477 . 907 1245 FH2 protein (formin) Gene Family AT5G07770 63.5 7.6e-111 398.3
Cmetu07g0822 . 966 1392 FH2 protein (formin) Gene Family AT3G32400 73.1 8.0e-170 594.0
Cmetu02g1753 . 849 1232 FH2 protein (formin) Gene Family AT3G32400 67.7 1.4e-142 503.4
Cmetu04g2809 . 862 1256 FH2 protein (formin) Gene Family AT3G32400 66.0 1.6e-141 500.0
Cmetu02g1238 . 842 1222 FH2 protein (formin) Gene Family AT3G32400 64.0 7.3e-131 464.5
Cmetu12g0477 . 877 1241 FH2 protein (formin) Gene Family AT3G32400 57.1 1.9e-110 396.7
Cmetu07g0822 . 1 1392 FH2 protein (formin) Gene Family AT2G25050 52.3 0.0e+00 1171.0
Cmetu02g1238 . 843 1222 FH2 protein (formin) Gene Family AT5G07780 60.0 3.0e-110 396.0
Cmetu07g0822 . 993 1382 FH2 protein (formin) Gene Family AT5G07780 54.6 5.8e-106 381.7
Cmetu04g2809 . 863 1252 FH2 protein (formin) Gene Family AT5G07780 52.7 4.6e-103 372.1
Cmetu12g0477 . 908 1240 FH2 protein (formin) Gene Family AT5G07780 57.3 9.0e-99 357.8
Cmetu02g1753 . 849 1223 FH2 protein (formin) Gene Family AT5G07780 52.8 2.5e-96 349.7
Cmetu02g1238 . 914 1229 FH2 protein (formin) Gene Family AT5G07760 70.2 3.7e-114 409.8
Cmetu07g0822 . 1066 1389 FH2 protein (formin) Gene Family AT5G07760 66.2 2.3e-111 400.6
Cmetu04g2809 . 936 1257 FH2 protein (formin) Gene Family AT5G07760 61.3 9.8e-107 385.2
Cmetu02g1753 . 918 1231 FH2 protein (formin) Gene Family AT5G07760 63.5 3.2e-105 380.2
Cmetu12g0477 . 983 1241 FH2 protein (formin) Gene Family AT5G07760 72.2 1.4e-100 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36