Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1277 ATGGGGGTATCATTACTTAAAGTGCTTCTTAGGCATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATAAATTTACAACCAACTCTGAAGTACTACCATAAAATAGAAGGGGCCTTGAAACTATTGAGACCAATACTGGATGCGGTTGTTGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTGAAGAACTTGATCATTCAGTGGATGAACTAAGAGTGCTCTTTGAAAATTGGCAACCGTTGTCAAGTAAAGTATACTTTGTCTTGCAAAGTGAAGCATTGATATCAAAGATTGGGAAATCTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCAGAGGAGCTGAGTTCAAAATCTCTTGAGCACTGCGTACAAAAAATTAAGCATATTGGAAAGGAAGAAATATCTTCTGTTATCAAAGATGCCATAAGGAATCAAGCAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTTAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGCGATCTTAATTGAGGCTGTGGCCCTTGAAAAATTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCAGAGGACATTGATCAAATGATTGCTCTTGTAACCCGTATGCATGAACGACTTATTATGATAAAGCAGTCCCAAAGTTCTAGTCCTGTATCAATACCTCCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGGCTCAATGTTTGCCCAAAGACTAGACAGACATTGGTTCACACAAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTATCAGATCCCTCAAAGTCAGTGAACCTAAACCAGCTTTCTCCTCTTCTAGTTGGGAGCTTTGAGCCTGATACCCATCGAGAACCCCTTTTTCCTCATTCCCCTGGCTACCAACCAATGTCTCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCTCTGTCTGAGGATTCCTTGTCAAATGATGCGGGAGATGAACGAGGGATTGAAGTTAGTAGACTATTGCTTTCAAGTTCAGAAGATCAAATGGCCAAATTGGAAGAAAATGGTTGCGATCCGGTTGCTAAACCATCTACGTCACCATCTGGAACCAATGTTCCAAATACCAGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGACTTCCTCCACCTCTAGTGGAGTCTCAAATGCTAATCACTCTCGGGGAACTTCAGGAGAAGCCAATGAAGCTACACACTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGACAACCAACCACAGAGAACCAGAGCGGGAGCATCCACCCAGACTAGCTGACCACCCAAGGCCTCGAGGTAATACGATGTGGCTCCGGCCGTCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGCTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAAAGCAGTTCACTTGACACTTTAAGAGGTGCTACAGCTGAATTGCGGCTGCTGGCCAAGCATAATATGGATAACCGGATAGTGATCGCCCAATGTGGGGCCATTGATTATTTGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAGCGCAATTGCCCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTATTGGGCAATGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCGCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCCGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATTCCCGTTCTGGTTGAGGTCGTTGAGTTGGGTTCTGCAAGAGGAAAAGAAAATGCGGCGGCAGCACTATTGCAGCTTTGCACGACAAGCAATAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCTAAAGAAAAGGCCCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCAGGAAGAGGGTAA 2496 43.95 MGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGALKLLRPILDAVVDSDIASDEELTQAFEELDHSVDELRVLFENWQPLSSKVYFVLQSEALISKIGKSSLDIFQLLQSSNENLPEELSSKSLEHCVQKIKHIGKEEISSVIKDAIRNQADGIAPSSDVLVKLADSLSLRSNQAILIEAVALEKLKESAEQAENTGEAEDIDQMIALVTRMHERLIMIKQSQSSSPVSIPPDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFEPDTHREPLFPHSPGYQPMSPQSTRSAGSGKNLNSLGGTHRDGSSSLLSHSLSEDSLSNDAGDERGIEVSRLLLSSSEDQMAKLEENGCDPVAKPSTSPSGTNVPNTSGEDEPSHSHNRTSSTSSGVSNANHSRGTSGEANEATHLSTNLTGYGSDAAGESKSEPLAAATSTTNHREPEREHPPRLADHPRPRGNTMWLRPSERFASRIITSSANETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIDYLIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29037314 29042528 - PI0001052.1 Cmetu11g1277 370009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1277 831 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Cmetu11g1277 831 Pfam Armadillo/beta-catenin-like repeat 618 657 IPR000225 GO:0005515
Cmetu11g1277 831 Pfam Armadillo/beta-catenin-like repeat 661 698 IPR000225 GO:0005515
Cmetu11g1277 831 MobiDBLite consensus disorder prediction 346 386 - -
Cmetu11g1277 831 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 711 752 IPR000225 GO:0005515
Cmetu11g1277 831 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 670 712 IPR000225 GO:0005515
Cmetu11g1277 831 MobiDBLite consensus disorder prediction 423 441 - -
Cmetu11g1277 831 FunFam RING-type E3 ubiquitin transferase 541 826 - -
Cmetu11g1277 831 SMART arm_5 659 699 IPR000225 GO:0005515
Cmetu11g1277 831 SMART arm_5 740 780 IPR000225 GO:0005515
Cmetu11g1277 831 SMART arm_5 782 822 IPR000225 GO:0005515
Cmetu11g1277 831 SMART arm_5 700 739 IPR000225 GO:0005515
Cmetu11g1277 831 SMART arm_5 618 658 IPR000225 GO:0005515
Cmetu11g1277 831 SMART arm_5 587 617 IPR000225 GO:0005515
Cmetu11g1277 831 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Cmetu11g1277 831 SUPERFAMILY ARM repeat 557 820 IPR016024 -
Cmetu11g1277 831 CDD RING-Ubox_PUB 237 289 IPR045210 -
Cmetu11g1277 831 Gene3D - 536 827 IPR011989 -
Cmetu11g1277 831 PANTHER U BOX DOMAIN-CONTAINING 29 821 - -
Cmetu11g1277 831 MobiDBLite consensus disorder prediction 504 519 - -
Cmetu11g1277 831 Coils Coil 397 417 - -
Cmetu11g1277 831 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Cmetu11g1277 831 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Cmetu11g1277 831 MobiDBLite consensus disorder prediction 448 486 - -
Cmetu11g1277 831 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Cmetu11g1277 831 MobiDBLite consensus disorder prediction 333 393 - -
Cmetu11g1277 831 MobiDBLite consensus disorder prediction 418 528 - -
Cmetu11g1277 831 Coils Coil 189 209 - -
Cmetu11g1277 831 SUPERFAMILY RING/U-box 224 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1277 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g0629 Cmetu-Chr8:19994222 Cmetu11g1277 Cmetu-Chr11:29037314 2.40E-26 dispersed
Cmetu11g1277 Cmetu-Chr11:29037314 Cmetu11g2343 Cmetu-Chr11:17065890 9.60E-27 dispersed
Cmetu01g1949 Cmetu-Chr1:22878023 Cmetu11g1277 Cmetu-Chr11:29037314 1.10E-66 transposed
Cmetu11g1277 Cmetu-Chr11:29037314 Cmetu08g0665 Cmetu-Chr8:19990077 6.90E-33 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004594 2 4 1 2 2 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 42