Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1342 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATCCCTCTTACAAATATGTAAGGAAGCTTTCTGGAGCAGATGCAACTCAAGATCAAGAGCACCTTCCTATTCTTTTTGATCACCAACACTCCATAATGGCGGTTTCCGATGCATCTGATCGGAAAGAGGTTATCGTCAAGGTCGATGAGGCCGATGCTTCGAGTCTAAGAGCTAGGGACTTGGTAAACGGAAGTGGCAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATAATGGCGAGGGTGGTGCTAAGACTACTGATGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAAGATCCGCCCTCCAAGCTTATCGGGCAGTTTCTTCACAAACAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCCGCTTTCTACGGTGGCGGAATCTCCGATGCGACGGAGTTCGAGAGAGTTGAAGGTTTCCTTCGAGTCTATTTCAGAAATATCTGAAAACGATTCCATGCGAAGACGGCACAGAGACTTGCCACTCGATGAAGAACATAGAGTTCAGCAACCGCAGCAGAGTGATCGTCGTGCGCATGGCAGCAATGGTGAAGATGATGGTGCTGCTGAGGTATTGAGATGCTCATCCAATTCTTCCTTTCAAAGAGATGTATCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAATCTAGATTACTGGATCCACCCGAACACCAAGACCGGAGGTCAGGACGTGTACCAAGATCAGGGCAAGTTCGCTCTGGTTTAATCTCAAAAGCCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAGGCCAATCTAGGTGTTCTGACTCTGTTACAATGGGCGAGTTTGATTCTGATAATCGCAGCATTGGTTTGCACTTTAACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAAGTATGGAAATGGGAGGTTATGATTCTTGTTCTAATATGTGGAAGACTTGTTTCTGGTTGGGGGATTAGGATAATTGTCTTCTTCATTGAAAGAAACTTCCTACTTCGTAAGAGGGTTCTATACTTTGTTTATGGAGTCAGAAAGGCGGTCCAGAATTGTCTTTGGTTAGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAGGTAAAAAGCAATGCCTTAGAATATGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTAGTAAAAACACTGATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGTCCTCCATTGATAGAGATTCAAAAGAATGAGGAAGAAGAAGAGAGGCTTGCTGAAGAGGTTATAAAGTTACAGAATGCAGGGGCTACCATCCCTCCTGATTTAAAGGCAACTGCCTTTTCTACAGCTCAAAAGGGTGGGAGGGTGATAGGGAGTGGAGGGTTGCAAAAAAGTCCTCGTGGAAGAAGTGGCAAGTTATCTAGGACACTGTCCAAAAAGGGCGGCGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGATTGATGAACATTGTTAGACATGGGACTCTTTCAACTTTGGATGAACAGATTAAAGATACAGCTCACGAGGACGAATCAACCACACAGATCAAGAGTGAATATGAGGCAAAAGTTGCTGCGAAGAAGATTTTTCTGAACGTGGCTAGAAATGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTGTTTGAAGGAGCATGTGAGAGTAGGAAAATAAGCAAATCATCATTGAAAAACTGGGTGGTTAATGCCTTTAGAGAACGAAGGGCTCTAGCTTTGACATTGAACGATACCAAAACAGCAGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTGTTGATTCTGGGTATTGCCACTAGCAAGTTTCTCCTATTCGTGACCTCTCAACTCGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAATCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTCGGAGACCGATGTGAAATTGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTCTGACTACCATTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGCGTTCTCGCAACAAAGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGGTGTAGAATTCTGTCTTCACATATCTACTCCACCCGAGAAAATTGCAATAATGAGACAAAGAATAATAAGTTACATTGAGGGCAAGAAAGAGCATTGGTGTCCTGCGCCAATGATTGTCCTAAAGGATGTAGAAGAGTTAAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGACAAGGAGAGCTCTTTGGTCGAAGAACTCGTTAAAATTTTCCAAGACCTCGATTTGCAATACCGTCTCCTACCACTCGATATCAATGTTCGCTCCTTGCCTCCTGTGA 2745 42.0 MDFSLKSFKSHPSYKYVRKLSGADATQDQEHLPILFDHQHSIMAVSDASDRKEVIVKVDEADASSLRARDLVNGSGRIWRESSYDFWNDSDNRRNNGEGGAKTTDDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTPLSTVAESPMRRSSRELKVSFESISEISENDSMRRRHRDLPLDEEHRVQQPQQSDRRAHGSNGEDDGAAEVLRCSSNSSFQRDVSFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPRSGQVRSGLISKALDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIRYWRRKKLWKLEVWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTAQKGGRVIGSGGLQKSPRGRSGKLSRTLSKKGGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGTLSTLDEQIKDTAHEDESTTQIKSEYEAKVAAKKIFLNVARNGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDGVEFCLHISTPPEKIAIMRQRIISYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALWSKNSLKFSKTSICNTVSYHSISMFAPCLL 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11637438 11641925 - PI0001674.1 Cmetu11g1342 370074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1342 914 MobiDBLite consensus disorder prediction 181 219 - -
Cmetu11g1342 914 PIRSF Memb_At2g17000 37 891 IPR016688 -
Cmetu11g1342 914 MobiDBLite consensus disorder prediction 89 108 - -
Cmetu11g1342 914 Gene3D - 753 802 IPR023408 -
Cmetu11g1342 914 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 41 887 IPR016688 -
Cmetu11g1342 914 MobiDBLite consensus disorder prediction 250 274 - -
Cmetu11g1342 914 MobiDBLite consensus disorder prediction 150 221 - -
Cmetu11g1342 914 SUPERFAMILY Sm-like ribonucleoproteins 743 802 IPR010920 -
Cmetu11g1342 914 FunFam Predicted mechanosensitive ion channel 753 802 - -
Cmetu11g1342 914 Coils Coil 482 505 - -
Cmetu11g1342 914 MobiDBLite consensus disorder prediction 524 549 - -
Cmetu11g1342 914 MobiDBLite consensus disorder prediction 252 269 - -
Cmetu11g1342 914 Pfam Mechanosensitive ion channel 695 854 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1342 K22048 - - csv:101210264 1657.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0462 Cmetu-Chr7:23533050 Cmetu11g1342 Cmetu-Chr11:11637438 5.40E-94 dispersed
Cmetu07g1894 Cmetu-Chr7:23524653 Cmetu11g1342 Cmetu-Chr11:11637438 5.80E-113 dispersed
Cmetu01g0333 Cmetu-Chr1:4992176 Cmetu11g1342 Cmetu-Chr11:11637438 0.00E+00 transposed
Cmetu11g1342 Cmetu-Chr11:11637438 Cmetu05g1758 Cmetu-Chr5:10161995 1.80E-143 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0130 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.2 7.5e-152 534.3
Cmetu06g1028 . 62 729 Mechanosensitive Ion Channel Family AT5G10490 58.2 2.0e-192 669.5
Cmetu03g1755 . 10 668 Mechanosensitive Ion Channel Family AT5G10490 54.4 2.6e-179 625.9
Cmetu03g1755 . 10 648 Mechanosensitive Ion Channel Family AT1G58200 53.4 3.6e-181 632.1
Cmetu06g1028 . 34 700 Mechanosensitive Ion Channel Family AT1G58200 52.8 1.5e-174 610.1
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G53470 56.1 1.8e-249 859.4
Cmetu01g0333 . 92 953 Mechanosensitive Ion Channel Family AT1G53470 51.0 1.0e-239 827.0
Cmetu11g1342 . 43 884 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.8e-237 817.8
Cmetu01g0333 . 60 953 Mechanosensitive Ion Channel Family AT1G78610 55.4 5.1e-273 937.6
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G78610 59.3 9.9e-269 923.3
Cmetu11g1342 . 217 891 Mechanosensitive Ion Channel Family AT2G17000 61.0 5.1e-225 778.1
Cmetu01g0333 . 267 941 Mechanosensitive Ion Channel Family AT2G17000 58.7 2.4e-222 769.2
Cmetu11g1342 . 1 668 Mechanosensitive Ion Channel Family AT2G17010 50.2 6.1e-165 578.2
Cmetu02g0585 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 9.0e-194 674.1
Cmetu07g1894 . 72 703 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.1e-178 622.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67