Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1435 ATGAATTTTCACAAACAAGACATGGAATTTCTTACCAAAAGTACAAAAGAAGATGAAGATCAAGATCAAGAAGAAGATGAAGAAGAAGATGAAGATCAAGAACAAGATCAAGATCTTGTTGCATGCAATTTCTTCCCAAATTCTCACACCCAATTAACCAAACAACAAGACCAAGATCAAGATCAAGAAAATGGGAATTATGAGTGTCAAAATGAGGAACATCAACCAATTCTCATGGATTTATCCTTAAGAATGGAAAGCAATGGTTTTGTTGATGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCGAGTGATGTTGGAAAATTAAACCGTTTAGTTATTCCAAAACAACATGCTGAGAAATACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTAAACTTTGAAGACCGTCATGGAAAGCCTTGGCGTTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGTCGTTTTGTTAAGGAGAAAAAACTCGACGCCGGCGATATCGTTTCTTTCCACCGTGCTCTCCCGAGTCATTCCGTCAACGACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCCGATGCTCCTACTCCTCATCACCATCACCACCATTTCTCTAACCCTTTTCTCCTCCGTTGGGGCACTACTGCTCGTCACTTGCCACCACCGCTGCCTCCGCCACGACGAACAACTCACAACCAACACCATCTTTACCCTAATTACGGGTTTGAAATCCCTAATTTTGGGATGTCTAATATTAATAATTCTTCCATGTATTATTTTCGACCGTCGTCCTCGTCTTCTTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGGGTGTTCTTCTATGGGGATTATTAACAAACCTGGGACCGGTGCCGCAAAACGATTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGACGGAGAAGGAGGAGGAGAGGATGTGTCAAACGGCGGCGTTCCGAGAAGAGGGAAAGAACCCTTGTCGTTGAATTGGGATTTACTTTAA 1077 42.06 MNFHKQDMEFLTKSTKEDEDQDQEEDEEEDEDQEQDQDLVACNFFPNSHTQLTKQQDQDQDQENGNYECQNEEHQPILMDLSLRMESNGFVDVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPSHSVNDRLFIDWRRRRPDAPTPHHHHHHFSNPFLLRWGTTARHLPPPLPPPRRTTHNQHHLYPNYGFEIPNFGMSNINNSSMYYFRPSSSSSSLYRMGNGDEIVVNNQGCSSMGIINKPGTGAAKRLRLFGVNMECASPDGEGGGEDVSNGGVPRRGKEPLSLNWDLL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1979898 1980998 + PI0018655.1 Cmetu11g1435 370167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1435 358 Pfam B3 DNA binding domain 100 205 IPR003340 GO:0003677
Cmetu11g1435 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 332 IPR044800 GO:0003700
Cmetu11g1435 358 CDD B3_DNA 98 187 IPR003340 GO:0003677
Cmetu11g1435 358 Gene3D - 93 219 IPR015300 -
Cmetu11g1435 358 ProSiteProfiles B3 DNA-binding domain profile. 100 206 IPR003340 GO:0003677
Cmetu11g1435 358 MobiDBLite consensus disorder prediction 328 358 - -
Cmetu11g1435 358 SMART B3_2 100 206 IPR003340 GO:0003677
Cmetu11g1435 358 MobiDBLite consensus disorder prediction 1 18 - -
Cmetu11g1435 358 MobiDBLite consensus disorder prediction 1 39 - -
Cmetu11g1435 358 FunFam B3 domain-containing protein 93 217 - -
Cmetu11g1435 358 MobiDBLite consensus disorder prediction 19 37 - -
Cmetu11g1435 358 SUPERFAMILY DNA-binding pseudobarrel domain 97 188 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1435 K09287 - - csv:101221141 620.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2519 Cmetu-Chr4:5344350 Cmetu11g1435 Cmetu-Chr11:1979898 1.80E-39 dispersed
Cmetu07g2066 Cmetu-Chr7:4770701 Cmetu11g1435 Cmetu-Chr11:1979898 6.80E-52 dispersed
Cmetu10g0653 Cmetu-Chr10:20200213 Cmetu11g1435 Cmetu-Chr11:1979898 2.00E-39 dispersed
Cmetu11g1435 Cmetu-Chr11:1979898 Cmetu09g0622 Cmetu-Chr9:915716 2.30E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g596 Blo01g00258 Blo12g00198 Bda03g01027 Bda08g00078 . . Bma04g00935 Bma05g01206 . Cmo17g00535 . . . . . . . . . . . . . . . . . . . . . Cone14ag0476 . . . . Csa06g00841 Chy11g01776 . . . Bda11g00402 . Bpe13g00799 Bpe04g00972 . Bma06g01360 Sed01g3764 . . . Cma17g00554 . Car17g00502 . Cpe12g00470 Bhi12g02268 Tan06g1845 Cmetu11g1435 Lac12g1184 Hepe03g0743 . . Cla06g00220 Cam06g0239 Cec06g0239 Cco06g0234 Clacu06g0233 Cmu06g0229 Cre06g1000 Lsi09g01706 . . Cme11g02307
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g2519 . 1 164 RAV Transcription Factor Family AT2G36080 58.5 3.5e-48 188.3
Cmetu11g1435 . 93 205 RAV Transcription Factor Family AT2G36080 69.8 1.1e-41 166.8
Cmetu09g0622 . 48 159 RAV Transcription Factor Family AT2G36080 68.7 7.9e-40 160.6
Cmetu07g2066 . 56 167 RAV Transcription Factor Family AT2G36080 69.8 1.0e-39 160.2
Cmetu10g0653 . 173 302 RAV Transcription Factor Family AT2G36080 58.8 4.3e-38 154.8
Cmetu09g0622 . 47 165 RAV Transcription Factor Family AT2G46870 85.8 3.3e-57 219.2
Cmetu11g1435 . 86 334 RAV Transcription Factor Family AT2G46870 52.4 1.3e-53 207.2
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 3.1e-39 159.5
Cmetu04g2519 . 35 155 RAV Transcription Factor Family AT2G46870 63.7 7.8e-38 154.8
Cmetu04g2519 . 32 166 RAV Transcription Factor Family AT3G11580 69.3 2.9e-45 179.1
Cmetu09g0622 . 48 161 RAV Transcription Factor Family AT3G11580 60.8 3.1e-39 159.1
Cmetu11g1435 . 81 212 RAV Transcription Factor Family AT3G11580 56.9 3.1e-39 159.1
Cmetu07g2066 . 59 167 RAV Transcription Factor Family AT3G11580 64.5 8.9e-39 157.5
Cmetu09g0622 . 49 167 RAV Transcription Factor Family AT3G61970 80.3 2.8e-53 206.1
Cmetu11g1435 . 94 213 RAV Transcription Factor Family AT3G61970 77.4 4.7e-48 188.7
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.8e-39 160.2
Cmetu04g2519 . 40 155 RAV Transcription Factor Family AT3G61970 64.7 5.2e-39 158.7
Cmetu09g0622 . 51 166 RAV Transcription Factor Family AT4G01500 68.3 3.3e-42 169.5
Cmetu11g1435 . 87 205 RAV Transcription Factor Family AT4G01500 65.6 3.6e-41 166.0
Cmetu07g2066 . 60 192 RAV Transcription Factor Family AT4G01500 56.0 7.5e-39 158.3
Cmetu04g2519 . 40 258 RAV Transcription Factor Family AT5G06250 51.7 9.9e-50 194.1
Cmetu07g2066 . 60 167 RAV Transcription Factor Family AT5G06250 69.7 4.9e-41 165.2
Cmetu09g0622 . 51 159 RAV Transcription Factor Family AT5G06250 64.7 2.1e-39 159.8
Cmetu11g1435 . 96 205 RAV Transcription Factor Family AT5G06250 65.0 2.1e-39 159.8
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT5G06250 62.4 7.4e-37 151.4
Cmetu02g2031 . 45 339 RAV Transcription Factor Family AT1G50680 53.1 1.5e-82 303.5
Cmetu02g0836 . 47 266 RAV Transcription Factor Family AT1G50680 61.9 1.9e-77 286.6
Cmetu02g2031 . 41 339 RAV Transcription Factor Family AT1G51120 51.8 3.8e-81 298.9
Cmetu02g0836 . 52 266 RAV Transcription Factor Family AT1G51120 64.0 3.0e-78 289.3
Cmetu10g0653 . 22 343 RAV Transcription Factor Family AT1G13260 66.1 2.5e-106 382.5
Cmetu09g0370 . 1 291 RAV Transcription Factor Family AT1G13260 61.8 7.2e-93 337.8
Cmetu09g0622 . 52 159 RAV Transcription Factor Family AT1G13260 71.6 8.6e-38 154.8
Cmetu11g1435 . 97 205 RAV Transcription Factor Family AT1G13260 69.1 4.3e-37 152.5
Cmetu04g2519 . 40 156 RAV Transcription Factor Family AT1G13260 66.7 4.3e-37 152.5
Cmetu10g0653 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 8.5e-99 357.5
Cmetu09g0370 . 34 291 RAV Transcription Factor Family AT3G25730 65.2 4.4e-87 318.5
Cmetu10g0653 . 1 344 RAV Transcription Factor Family AT1G68840 61.2 1.2e-111 400.2
Cmetu09g0370 . 1 294 RAV Transcription Factor Family AT1G68840 59.1 1.4e-91 333.6
Cmetu09g0622 . 51 159 RAV Transcription Factor Family AT1G68840 70.3 2.3e-38 156.8
Cmetu04g2519 . 40 158 RAV Transcription Factor Family AT1G68840 67.5 3.0e-38 156.4
Cmetu11g1435 . 96 212 RAV Transcription Factor Family AT1G68840 64.7 8.8e-38 154.8
Cmetu10g0653 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 8.5e-99 357.5
Cmetu09g0370 . 34 291 RAV Transcription Factor Family AT3G25730 65.2 4.4e-87 318.5
Cmetu02g2031 . 41 339 RAV Transcription Factor Family AT1G51120 51.8 3.8e-81 298.9
Cmetu02g0836 . 52 266 RAV Transcription Factor Family AT1G51120 64.0 3.0e-78 289.3
Cmetu04g2519 . 32 166 RAV Transcription Factor Family AT3G11580 69.3 2.9e-45 179.1
Cmetu09g0622 . 48 161 RAV Transcription Factor Family AT3G11580 60.8 3.1e-39 159.1
Cmetu11g1435 . 81 212 RAV Transcription Factor Family AT3G11580 56.9 3.1e-39 159.1
Cmetu07g2066 . 59 167 RAV Transcription Factor Family AT3G11580 64.5 8.9e-39 157.5
Cmetu09g0622 . 51 166 RAV Transcription Factor Family AT4G01500 68.3 3.3e-42 169.5
Cmetu11g1435 . 87 205 RAV Transcription Factor Family AT4G01500 65.6 3.6e-41 166.0
Cmetu07g2066 . 60 192 RAV Transcription Factor Family AT4G01500 56.0 7.5e-39 158.3
Cmetu04g2519 . 1 164 RAV Transcription Factor Family AT2G36080 58.5 3.5e-48 188.3
Cmetu11g1435 . 93 205 RAV Transcription Factor Family AT2G36080 69.8 1.1e-41 166.8
Cmetu09g0622 . 48 159 RAV Transcription Factor Family AT2G36080 68.7 7.9e-40 160.6
Cmetu07g2066 . 56 167 RAV Transcription Factor Family AT2G36080 69.8 1.0e-39 160.2
Cmetu10g0653 . 173 302 RAV Transcription Factor Family AT2G36080 58.8 4.3e-38 154.8
Cmetu04g2519 . 40 258 RAV Transcription Factor Family AT5G06250 51.7 9.9e-50 194.1
Cmetu07g2066 . 60 167 RAV Transcription Factor Family AT5G06250 69.7 4.9e-41 165.2
Cmetu09g0622 . 51 159 RAV Transcription Factor Family AT5G06250 64.7 2.1e-39 159.8
Cmetu11g1435 . 96 205 RAV Transcription Factor Family AT5G06250 65.0 2.1e-39 159.8
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT5G06250 62.4 7.4e-37 151.4
Cmetu09g0622 . 47 165 RAV Transcription Factor Family AT2G46870 85.8 3.3e-57 219.2
Cmetu11g1435 . 86 334 RAV Transcription Factor Family AT2G46870 52.4 1.3e-53 207.2
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 3.1e-39 159.5
Cmetu04g2519 . 35 155 RAV Transcription Factor Family AT2G46870 63.7 7.8e-38 154.8
Cmetu02g2031 . 45 339 RAV Transcription Factor Family AT1G50680 53.1 1.5e-82 303.5
Cmetu02g0836 . 47 266 RAV Transcription Factor Family AT1G50680 61.9 1.9e-77 286.6
Cmetu09g0622 . 49 167 RAV Transcription Factor Family AT3G61970 80.3 2.8e-53 206.1
Cmetu11g1435 . 94 213 RAV Transcription Factor Family AT3G61970 77.4 4.7e-48 188.7
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.8e-39 160.2
Cmetu04g2519 . 40 155 RAV Transcription Factor Family AT3G61970 64.7 5.2e-39 158.7
Cmetu10g0653 . 22 343 RAV Transcription Factor Family AT1G13260 66.1 2.5e-106 382.5
Cmetu09g0370 . 1 291 RAV Transcription Factor Family AT1G13260 61.8 7.2e-93 337.8
Cmetu09g0622 . 52 159 RAV Transcription Factor Family AT1G13260 71.6 8.6e-38 154.8
Cmetu11g1435 . 97 205 RAV Transcription Factor Family AT1G13260 69.1 4.3e-37 152.5
Cmetu04g2519 . 40 156 RAV Transcription Factor Family AT1G13260 66.7 4.3e-37 152.5
Cmetu10g0653 . 1 344 RAV Transcription Factor Family AT1G68840 61.2 1.2e-111 400.2
Cmetu09g0370 . 1 294 RAV Transcription Factor Family AT1G68840 59.1 1.4e-91 333.6
Cmetu09g0622 . 51 159 RAV Transcription Factor Family AT1G68840 70.3 2.3e-38 156.8
Cmetu04g2519 . 40 158 RAV Transcription Factor Family AT1G68840 67.5 3.0e-38 156.4
Cmetu11g1435 . 96 212 RAV Transcription Factor Family AT1G68840 64.7 8.8e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8784 PF02362 B3 4.10E-28 CL0405 Cmetu TF