Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1444 ATGGCTGGGATTCTGAAAAAGTTTTTTCATGAGAAGCCTTCTTCTCCTGTTAATCATGAGGATTTTACTGGTGAATATTCTTTTGCCATTGAGTATAAAGGTCCTGGAATCAATTACGAGATTCCTCGTGCAGTTCCTATAAATGTTGATTATATTCCAACTGCTTCTGTAGTTCTTTCATCATCTCAATTCAGTGATGATTTATCATCTCTGCCTGTGATACAACCCATTGCTAAGAAACTAAAGAGGGGTTCAAGTTCCAGCCCTAATTCTGTAATTTCTTCAACTTCAGAAATCCAGGAAGATGAGGCTGTTTGCCTCCATGCCAATAAGGAAGATGAATGTAATATCGATTCGTGTGATGGAGTTGAAAGTTCTGGTGAACTTGAGAATTTCAATGAGCTGAAAGGAAGAATAGGAGGGTTAGAATCATTGGAAATTAAGAATGAAGAGGATTTTCAAGGCTATACGAATTCCAGCGACTCGGAAACAGTAGAATCGGGTTTGAGTTCCTCTTCTGGAATTTTTGCTGTAAGAGAGGAAGAGGAAGTTGACAATGAAACTCAGCCTAGGCATGGCAGAAGGCCATCAGCTGTTACCTTTCTTGATCCCCATACAAGCAGCACGATTTCTGAAGAGGCTGAATCAAGTCAATTTGAGGGTGAAAGCATTCAAGAGATGCCTAGAGCTGAAAGGAAGGGAAAAAAAGGATCATGCTACTTCTGCCTTAAAGGAAACCGTTTCACTGAAAAGGAAGTATGTATAGTTTGTGGAGCTAAATATTGCTTTGACTGTATAATCAGAGCAATGGGAACAATGCCAGAAGGAAGAAAGTGTATCTCTTGCATTGGGTTTAGGATTGATGAATCAAGAAGAGAGAACTTGGGTAAAAGCTCTAAAGTGCTCAAGAGGTTGCTTACTAACTCTGAAATTAAGAGCGCAATGTTGCATGAGAAAGAGTGTGAAATAAACCAACTACCAGCTAGACTTATCTACGTCAATGGCGATCCTTTAAGTCGACAGGAACTGCTTATGTTGCGAAGTTGCCGAAAGCCACCAAAGAATCTAAAACCAGGACAATATTGGTATGACAAAGAATCAGGCTTCTGGGGAAAGGAAGGACATGGACCAAGTCAGATAGTTAGCTCCCAGCTAGAAGTTGGAGGTCGGATCAAGAGGAATGCTAGCAATGGCAATACGAACGTGTGCATTAATAATCGAGAGATCACCAAAAAAGAGCTCCGGATACTGAAGACCTTCTTTTGGGTTAGTGCAGATGGATCATATCAGGAAGAAGGAATGAACAATGGAGGAAAAATATGGGAGAAGACTAGAACGAAGCTTGCATGTGCCCTTTTTTCTTTGCCTATTCCTTCTAATTCTGTTCGTACTGGAGAGGAAATAGAGGACGGAGATAAATCTGTTTCTTCCGAGCAGAAAATACTTCATAAACTTCTACTTGTTGGCCACAAAAAATCTGGCACGAGTACCATATTCAAGCAGGCCAAACAAATATATAAAGTTCCTTTCTCTGATGACGAACGTCAAACCATTAAGTTCCTGATTCAAAGGAACTTGTATTGGTATCTCAGTATACTATTGGAAGGACGGGAACGTTTCGAAGAAGAGATTTTGATGGATGAGAAAAATAAACAACCAGTGAATGATCCGTCCACCTCATCAGCATCAGGGAATGAAAATCAGTTGGAGTGTAAGGACATCTATTCTCTTGGCCCTAAACTGAAAAGATTTGCAGATTTGCTTCTTCAAGTCGTGGTGTCGGGGACCTTTGAAACCGTATTCCCAGCTGCTACTCGTGTCTATGCTCAATTAGTGGAAGAGTTGTTCAAGGATGAAGCCTTCCAAGCCACGTACAGTAGAAGGAACGAACTAGAAATGCTCCCACGAGTTGCTACTTATTTCCTTGATCGGGCTATTGACATTTCAAGCATAGAGTATGACCCTTCTGACAATGATATCTTGTACGCTGAGGGAATCTCCTCGTGTAACAGCCTTAGTAGCATGGAGTTCACGTTCCCTGAGTCACGACAAGACTCCATTCTCGACCCTCCTTATCAGCACGATCTGTCAATAAGGTACCAGCTGATTCGAATCCATTCCAGTACCCTAGGAGAAAACTGCAAATGGTTGGAAATGTTTGAAGACATGAGCATAATCTTATTCGTAGTCGATTTAACCGACTACGATAAATTTGATGAGGATGATAACGGAGGTCTAACGAACCGAATGATCGCAAGCAAGCAACTGTTCGAAAGCATTGTGACACATCAAGCCTCAAGGGGAAAGAACTTCCTTCTCATACTCAACAAGTTTGATCTGTTTGAAGAAAAGATCATTCAAGTTCCTCTTGCTCAATGTGAGTGGTTTGTCGACTTCAATCCAATGATCACTGGAAGAAGTAGCAGCAGCACGAACCCGACATTGGCACAACGAGCGTTTCAGTACATAGCAGTGAAATTCAAGAGATTGTTTTGTTCTTTGACAGACAAAAAGTTGTTTGTTTCACAAACGACAGGGATGGAGCCTGAAAATGTCAATGCTGCTTTGAGATATGCAAGGGAGATAATCAAATGGCAAGTTGACAAACCTAACATCAGCTTTACGGAAATTTCATGTACTAGTGTTGATGCAAGCAGCTTCACATAG 2667 41.13 MAGILKKFFHEKPSSPVNHEDFTGEYSFAIEYKGPGINYEIPRAVPINVDYIPTASVVLSSSQFSDDLSSLPVIQPIAKKLKRGSSSSPNSVISSTSEIQEDEAVCLHANKEDECNIDSCDGVESSGELENFNELKGRIGGLESLEIKNEEDFQGYTNSSDSETVESGLSSSSGIFAVREEEEVDNETQPRHGRRPSAVTFLDPHTSSTISEEAESSQFEGESIQEMPRAERKGKKGSCYFCLKGNRFTEKEVCIVCGAKYCFDCIIRAMGTMPEGRKCISCIGFRIDESRRENLGKSSKVLKRLLTNSEIKSAMLHEKECEINQLPARLIYVNGDPLSRQELLMLRSCRKPPKNLKPGQYWYDKESGFWGKEGHGPSQIVSSQLEVGGRIKRNASNGNTNVCINNREITKKELRILKTFFWVSADGSYQEEGMNNGGKIWEKTRTKLACALFSLPIPSNSVRTGEEIEDGDKSVSSEQKILHKLLLVGHKKSGTSTIFKQAKQIYKVPFSDDERQTIKFLIQRNLYWYLSILLEGRERFEEEILMDEKNKQPVNDPSTSSASGNENQLECKDIYSLGPKLKRFADLLLQVVVSGTFETVFPAATRVYAQLVEELFKDEAFQATYSRRNELEMLPRVATYFLDRAIDISSIEYDPSDNDILYAEGISSCNSLSSMEFTFPESRQDSILDPPYQHDLSIRYQLIRIHSSTLGENCKWLEMFEDMSIILFVVDLTDYDKFDEDDNGGLTNRMIASKQLFESIVTHQASRGKNFLLILNKFDLFEEKIIQVPLAQCEWFVDFNPMITGRSSSSTNPTLAQRAFQYIAVKFKRLFCSLTDKKLFVSQTTGMEPENVNAALRYAREIIKWQVDKPNISFTEISCTSVDASSFT 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26985088 26989433 - PI0023638.1 Cmetu11g1444 370176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1444 888 FunFam Guanine nucleotide-binding protein G(k) subunit alpha 675 871 - -
Cmetu11g1444 888 MobiDBLite consensus disorder prediction 178 192 - -
Cmetu11g1444 888 PANTHER OS01G0977800 PROTEIN 19 408 - -
Cmetu11g1444 888 CDD G-alpha 483 866 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmetu11g1444 888 Pfam G-protein alpha subunit 477 863 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmetu11g1444 888 Gene3D - 670 869 IPR027417 -
Cmetu11g1444 888 ProSiteProfiles G-alpha domain profile. 481 875 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmetu11g1444 888 MobiDBLite consensus disorder prediction 154 174 - -
Cmetu11g1444 888 MobiDBLite consensus disorder prediction 201 223 - -
Cmetu11g1444 888 MobiDBLite consensus disorder prediction 154 223 - -
Cmetu11g1444 888 SUPERFAMILY Transducin (alpha subunit), insertion domain 510 663 IPR011025 GO:0007165
Cmetu11g1444 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 866 IPR027417 -
Cmetu11g1444 888 SMART galpha_1 462 877 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmetu11g1444 888 PRINTS Alpha G protein (transducin) signature 484 499 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmetu11g1444 888 PRINTS Alpha G protein (transducin) signature 723 751 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmetu11g1444 888 PRINTS Alpha G protein (transducin) signature 771 780 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmetu11g1444 888 Gene3D - 511 664 IPR011025 GO:0007165
Cmetu11g1444 888 Gene3D - 247 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1444 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g1444 Cmetu-Chr11:26985088 Cmetu12g0562 Cmetu-Chr12:85191 2.00E-179 dispersed
Cmetu11g1444 Cmetu-Chr11:26985088 Cmetu08g0807 Cmetu-Chr8:19309230 2.20E-223 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42