Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1451 ATGCCGTCTGAAGTTTTGGACTTGAAGGGTTTGTCTTCATCTTCCTTCTTCTCCGACGATTTACGTCATTCAGATGAGGTTGGAGTTTGGAAGTCAGCTAGTGTGCCAAATCACCGTGCCAGTAACATATCAGGTTCTTCATCGTCTGTGGAAAAATTTTCAATAGGTGAGTGCCTGCCAGAGAACTCCCTGGAAAATCATGATTCATTTCCTGTGAGAGATCAGAATGCAAGTCTTATCCTGAATAGACATGCTGTTGGAGCTGAAAGAACATCCCATTATTTTTCTCGAAGTAATGAAGTCAATATGATGAATTCTCAGTATGAGAGTAGTCTTTTCTCAAGTTCTTTATCAGATATATTTACTAGGAAGTGCTCAACCATCGGAAACCTCCTCCCTGATGATGATGACTTACTTGCGGGAGTAACTGATGGGCTTGATTGTTTGGTTGAAACTACTGGCGATGATGATGCTGAGGACTTAGATTTTTTTAGCAATGTTGGAGGGATGGATTTGGGTGATGATGGATTATCTGTGGGACAGAAGAATTCTGAATCTCCTGGACTCTTTAACAATTGGGGATGCATAATGAAATATAATAGCAATGTTGAAGATTCTGAATTGAAGGTCCTTTTTGAGCAATATGGAGACATTCGTACTCTTTATACAGCATGCAAACACCGAGGGTTTGTTATGATATCCTATTATGATATTAGAGCTGCCCGTAATGCAATGAAAGCACTCCAGAATAAACCGTTGAGACGAAGGAAGCTTGACATACATTATTCTATACCGAAGGACAACCCTTCTGAAAAAGATATCAACCAAGGAACTCTTGTTGTTTTTAACCTTGAGTCTTCCGTATCAAATGAAGAACTTCGACAAATATTTGGTGTCTATGGAGAAATCAAAGAGATCCGTGAAGCCCCCCACAGAAGTCATCATAAATTCATTGAATTTTATGATATCCGAGCTGCAGAGGCTGCTCTTTGTGCATTAAACCTGAGTGATATAGCAGGCAAGCAGATAAAGCTTGAGCCAAGTCGTCCTGGTGGTGTGAGACGCAGTTTGGTACAACAATTACATCCACAATTGGAGCGGGAAGATATTGGTCTCTATTTGCAACAGGGTAGCCCTCCCATTAACTGTAGTGCCGGCTTCTCTGGCTTAGTTCCTAGTGGGACTATCAAGTCTAGCAGCCTGAGTAATGGATCTGTTCTTGGAGTACACTCTATGTTACGAGCTCCATCTTTGGAGACTGTGTTGCATCATGGGATATCTTCTAGCGTTCCTAGTAGCTTACCTTCTGTAATGAGATCTGAATCAACTGGCAACCAATCTGGCTTCATTGACTCTGGTCATTCACCTTCGCAACTGAAGCTAGGTATCCGGGCATCTTCAGCTGTTCATCCTCATTCACTTCCAGAACACCCTGATGGTTTGAACAACAATGTTCACTGCAATTCTCTAAATACGATTGCAGGAAACATCAATCTTCGACCGCCCGAAAGAGCTGATAGCAGGCAGCTATGTGGAGTAAACTTTAATGGTCGCTCAATTGAATTGAATGAAGATGTTTTTGCATCTGGTGGTAACAGAACATGCCCCATTCCTGGACCTCATTATGCATGGGGTAACTCCTACCGACCCCAGCCTCCAGCTCCAGGTGTTGTATGGCCAAATTCTCCATCTTATATGAATGGCATTGCTGCTGCCCATACCCCAACCCAGGTTCATGGTGTTCCAAGAGCAGCATCCCATTTGATGCACACAGTTATGCCGATGAATAATCACCACGTTGGATCAGCACCAGCTGTTAATCCTTCTATTTGGGATAGACAACATGCTTATGCTGGGGAATTGTCAAAGGCCTCTGGTTTCCATTCAGGTTCCATAGGGAATATGAATTTGTCTAACAATTCACCACAGTCTATGGATTTTTTCTCTCATATCTTCCCTCAAGTTGGTGGAAATTCTGTAGAGCTTCCTATCCCTCAAAGGAATGTAGGACTACAATCTCATCATCAGCGGTGCATGGTTTTTCCTGGACGGGGCCAAATTCTTCCAATGATGAATTCATTTGACTCTTCAAATGAACGTGGTAGAAGCCGAAGAAATGAAGCAGCCTCTAATCAAGCAGATAAGAAGCAATATGACTTGATATCGATCCTCATAATCCATCATGATTGTATTGCCAGGTATACCTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCATCGAGGAACATACGACTTCATCTATCTGCCCATTGACTTTAAGAACAAATGTAACGTGGGATATGCGTTCATTAACATGACTGATCCTGGCCTAATTATTCCATTCTATGAGGCATTTAATGGAAAAAAATGGGAGAAATTCAATAGTGAGAAGGTGGCATCACTTGCATATGCTCGCATACAGGGAAAAGCTGCTCTCATCGCTCATTTCCAGAATTCAAGCTTAATGAATGAAGATAAGAGATGCCGACCAATCCTTTTCAACACAGATGGCCCCAATGCAGGTGATCAGGTTCCGTTTCCGATGGGGGTAAATGTACGTACTAGGCCTGGAAAAACTCGAACCAATACGCCAGATGAAATCCTGATGAAGGATTTGGACCAGCCAGTACCATAA 2637 42.43 MPSEVLDLKGLSSSSFFSDDLRHSDEVGVWKSASVPNHRASNISGSSSSVEKFSIGECLPENSLENHDSFPVRDQNASLILNRHAVGAERTSHYFSRSNEVNMMNSQYESSLFSSSLSDIFTRKCSTIGNLLPDDDDLLAGVTDGLDCLVETTGDDDAEDLDFFSNVGGMDLGDDGLSVGQKNSESPGLFNNWGCIMKYNSNVEDSELKVLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDINQGTLVVFNLESSVSNEELRQIFGVYGEIKEIREAPHRSHHKFIEFYDIRAAEAALCALNLSDIAGKQIKLEPSRPGGVRRSLVQQLHPQLEREDIGLYLQQGSPPINCSAGFSGLVPSGTIKSSSLSNGSVLGVHSMLRAPSLETVLHHGISSSVPSSLPSVMRSESTGNQSGFIDSGHSPSQLKLGIRASSAVHPHSLPEHPDGLNNNVHCNSLNTIAGNINLRPPERADSRQLCGVNFNGRSIELNEDVFASGGNRTCPIPGPHYAWGNSYRPQPPAPGVVWPNSPSYMNGIAAAHTPTQVHGVPRAASHLMHTVMPMNNHHVGSAPAVNPSIWDRQHAYAGELSKASGFHSGSIGNMNLSNNSPQSMDFFSHIFPQVGGNSVELPIPQRNVGLQSHHQRCMVFPGRGQILPMMNSFDSSNERGRSRRNEAASNQADKKQYDLISILIIHHDCIARYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTDPGLIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNVRTRPGKTRTNTPDEILMKDLDQPVP 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1374601 1381485 - PI0003852.1 Cmetu11g1451 370183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1451 878 CDD RRM1_MEI2_like 200 267 IPR034453 -
Cmetu11g1451 878 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 265 IPR000504 GO:0003723
Cmetu11g1451 878 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 258 IPR000504 GO:0003723
Cmetu11g1451 878 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 344 IPR000504 GO:0003723
Cmetu11g1451 878 SUPERFAMILY RNA-binding domain, RBD 201 352 IPR035979 GO:0003676
Cmetu11g1451 878 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 350 IPR000504 GO:0003723
Cmetu11g1451 878 SMART rrm1_1 194 261 IPR000504 GO:0003723
Cmetu11g1451 878 SMART rrm1_1 278 346 IPR000504 GO:0003723
Cmetu11g1451 878 PANTHER RNA RECOGNITION MOTIF-CONTAINING 42 868 - -
Cmetu11g1451 878 MobiDBLite consensus disorder prediction 845 878 - -
Cmetu11g1451 878 MobiDBLite consensus disorder prediction 430 455 - -
Cmetu11g1451 878 Gene3D - 195 275 IPR012677 -
Cmetu11g1451 878 SUPERFAMILY RNA-binding domain, RBD 734 809 IPR035979 GO:0003676
Cmetu11g1451 878 FunFam Protein MEI2-like 1 276 371 - -
Cmetu11g1451 878 MobiDBLite consensus disorder prediction 692 711 - -
Cmetu11g1451 878 Gene3D - 276 366 IPR012677 -
Cmetu11g1451 878 CDD RRM3_MEI2_like 733 810 IPR034454 -
Cmetu11g1451 878 CDD RRM2_MEI2_like 276 346 - -
Cmetu11g1451 878 Pfam RNA recognition motif 2 729 818 IPR007201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1451 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0911 Cmetu-Chr5:21018490 Cmetu11g1451 Cmetu-Chr11:1374601 1.30E-132 dispersed
Cmetu07g0205 Cmetu-Chr7:19426066 Cmetu11g1451 Cmetu-Chr11:1374601 1.20E-11 dispersed
Cmetu11g1451 Cmetu-Chr11:1374601 Cmetu10g1346 Cmetu-Chr10:18061576 7.80E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46