Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1479 ATGAAGTCATTTTTATTTCAGGTTCTTGAGATATTGGAACTGTATAGGCGCATATATGAAGAATACCTGGCGATTCCAAGGGCAAGAAAAGTGAGATGGAGAAGTTTGCTGGCATTTGTCCTAAACACTGGTCGTGGTATTCAAGGTGCGACTTCACATTGTTTGGGTCAAAATTTTGCAAAAATGTTTGAAATCAACTTTGAAAATGAAAAGGGGGAGAAAGCTATGGTCTGGCAAAATTCGTGGGCCTATAGTTCCAGAACGATTGGTGTGATGGTTATGGTTCACGGTGATGACAAGGGATTGGTGATGCCTCCCAAAGTTGCATCAGTTCAAGTCATTATAGTTCCTGTACCTTACAAAGATGCAGATACTCAAGGAATTTTTGATGCTTGTTCTGCCACTTCGGATACGTTGTCCAAAGTAGGAATTCGTGCAGAGGTAGACATTAGGGAGAACTATTCTCCTGGATGGAAGTACTCCCACTGGGAGATGAAAGGTGTTCCACTCAGGATTGAAATAGGGCCTAAGGACTTGGCAAACAATCAGGTTAGATATTCTGTGTATTAG 570 41.58 MKSFLFQVLEILELYRRIYEEYLAIPRARKVRWRSLLAFVLNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSSRTIGVMVMVHGDDKGLVMPPKVASVQVIIVPVPYKDADTQGIFDACSATSDTLSKVGIRAEVDIRENYSPGWKYSHWEMKGVPLRIEIGPKDLANNQVRYSVY 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7981123 7982448 + PI0028069.1 Cmetu11g1479 370211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1479 189 Gene3D - 106 188 IPR036621 -
Cmetu11g1479 189 Pfam Anticodon binding domain 112 186 IPR004154 -
Cmetu11g1479 189 Gene3D Bira Bifunctional Protein; Domain 2 2 103 IPR045864 -
Cmetu11g1479 189 SUPERFAMILY Class II aaRS ABD-related 100 186 - -
Cmetu11g1479 189 PANTHER PROLYL-TRNA SYNTHETASE 7 186 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cmetu11g1479 189 FunFam bifunctional glutamate/proline--tRNA ligase 106 188 - -
Cmetu11g1479 189 SUPERFAMILY Class II aaRS and biotin synthetases 8 118 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1479 K01881 - - csv:101211125 318.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu09g1169 Cmetu-Chr9:8715490 Cmetu11g1479 Cmetu-Chr11:7981123 5.20E-88 dispersed
Cmetu11g1479 Cmetu-Chr11:7981123 Cmetu11g2115 Cmetu-Chr11:8384355 8.40E-104 dispersed
Cmetu11g1479 Cmetu-Chr11:7981123 Cmetu09g1905 Cmetu-Chr9:6523570 2.60E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g742 . . Bda05g00086 . Bpe03g00272 . Bma10g01239 . . Cmo18g01292 . . . . Sed11g1514 . . Bhi01g01267 Tan01g0211 Cmetu11g1479 . Hepe07g0133 . . . . . . . . . Cone1ag1180 Cone5ag0884 . . Lsi05g01205 . . . Blo07g00389 . . . . . . . . . . . Cma18g01263 . Car18g01173 Cpe09g00073 . . . . . . . . Cla05g00903 Cam05g0987 Cec05g0993 Cco05g0991 Clacu05g0975 Cmu05g0932 Cre05g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017866 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 6