Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1511 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCAAATGTGTGTTCAAGGTGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTTGGAGGCCCTGATAAAGCTACCCCTAAGACCATCATGCGGGTTATGGGTGTCAAGGGTCTCACTCTATACCATCTCAAAAGTCATCTTCAGAAGTTCAGACTTGGAAAGCAACCTCACAAGGAATTCAATGATCAATCAATAAAGGATGGAATAAGAGCTTCAGCCTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAATATGAACGAAATGCATATGGAGGTCCAGAGACGACTTCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTTGCCGGTGAAAATATAGCCGCCGCCACCGCCCCCGCCGGACCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAACCTTGTCTCAGACGCCGCCATCAAAGACTTCATTTCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGACCCGCAACCACCTCCGCCGCCTCTCATTGACTGCCTCAAAAAGCCCAGCCCCTTCATCTCCGGTGCCGGTAAGACCCCCATTTTCTGGCCGGACGATCTCAGACTCCAAGACTTAGGAACTCCTTCCGCCACCTTAGCACCCGCACCGCCTCCCATCGGTGGCCCACCCGACTTGGACTCTCTACAGTTGGAAATGTATGAATCCAAACCGCCGCCAGCACCCTCGCTACTCGCTGTTGGCAATAACTCCATGAATGAGAAGAAGTTTGACGTGACGTTAAAGCTCGAGAGACCATCCCCACAGCGGTCGGGGCATTCGGACGAAAGGGTGAATAATAATAATAATGGTATGGCTAACAATAACAATCCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1089 49.49 MFHATKKPSSMTSHDRQMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSTLMDRNMNEMHMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENIAAATAPAGPFKTTSNNMGTTTNLVSDAAIKDFISPHHTFPPFQDMNNLFNSDPQPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPAPPPIGGPPDLDSLQLEMYESKPPPAPSLLAVGNNSMNEKKFDVTLKLERPSPQRSGHSDERVNNNNNGMANNNNPTMSQPQGRNSSFG 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8487868 8491183 - PI0009049.1 Cmetu11g1511 370243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1511 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Cmetu11g1511 362 Gene3D - 32 90 - -
Cmetu11g1511 362 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cmetu11g1511 362 MobiDBLite consensus disorder prediction 315 330 - -
Cmetu11g1511 362 MobiDBLite consensus disorder prediction 331 362 - -
Cmetu11g1511 362 FunFam Myb family transcription factor 32 90 - -
Cmetu11g1511 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cmetu11g1511 362 MobiDBLite consensus disorder prediction 265 287 - -
Cmetu11g1511 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 190 IPR044848 GO:0003700
Cmetu11g1511 362 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
Cmetu11g1511 362 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cmetu11g1511 362 MobiDBLite consensus disorder prediction 314 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1511 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0187 Cmetu-Chr6:2607479 Cmetu11g1511 Cmetu-Chr11:8487868 1.50E-41 dispersed
Cmetu08g0377 Cmetu-Chr8:12690542 Cmetu11g1511 Cmetu-Chr11:8487868 1.10E-17 dispersed
Cmetu11g1511 Cmetu-Chr11:8487868 Cmetu11g2531 Cmetu-Chr11:14506597 5.90E-13 dispersed
Cmetu01g1460 Cmetu-Chr1:7097844 Cmetu11g1511 Cmetu-Chr11:8487868 7.40E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu06g1509 . 241 442 G2-like Transcription Factor Family AT5G16560 57.1 3.1e-47 186.4
Cmetu04g1719 . 178 383 G2-like Transcription Factor Family AT5G16560 50.9 1.4e-39 161.0
Cmetu04g2692 . 1 162 G2-like Transcription Factor Family AT5G42630 59.3 1.6e-37 153.3
Cmetu02g0350 . 4 340 G2-like Transcription Factor Family AT2G03500 50.3 3.3e-79 292.7
Cmetu10g0277 . 19 255 G2-like Transcription Factor Family AT1G25550 51.0 3.8e-52 202.2
Cmetu03g2101 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 2.5e-51 199.5
Cmetu12g0038 . 1 270 G2-like Transcription Factor Family AT3G46640 51.3 5.8e-60 228.4
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT5G05090 55.4 1.5e-74 276.6
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT5G05090 54.5 4.7e-68 255.0
Cmetu06g0187 . 12 315 G2-like Transcription Factor Family AT4G13640 57.1 8.4e-66 247.7
Cmetu04g1868 . 88 396 G2-like Transcription Factor Family AT3G04450 50.2 2.3e-58 223.4
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu05g0010 . 3 252 G2-like Transcription Factor Family AT1G69580 51.6 6.0e-52 201.8
Cmetu01g1460 . 1 394 G2-like Transcription Factor Family AT1G79430 52.1 2.2e-84 309.7
Cmetu11g1511 . 1 362 G2-like Transcription Factor Family AT1G79430 52.0 4.0e-78 288.9
Cmetu06g0187 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 7.8e-42 168.3
Cmetu04g1972 . 84 300 G2-like Transcription Factor Family AT2G01060 65.6 1.2e-54 210.3
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 2.9e-91 332.4
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT3G10760 58.2 4.7e-81 298.5
Cmetu08g1522 . 1 191 G2-like Transcription Factor Family AT2G40970 63.8 2.8e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8791 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cmetu TF