Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1536 ATGGATCACGATGATTCGAGTGTTCGATTATCTGCTCTGTGGAACATAATTGCTCTAAAGAGAATGCTTAAAGTAGACAGAATTCCTTGCCAAATTGAAGAGGGTCTGTTCTTAGGCTCCGTTGGAGCTGCCCATAACAAAGATCAACTGAAGAAATTGAATATCACTCACATTTTAACCATTGCTTGTTCATTGCCACCTGCTAATCCAAACGATTTTGTTTATAAAGTAGTTGGTGTCGTGGACAGTAGAGATGCAGATATTAAACAGCACTTTGACGATTGTTTCAACTTTATCGATGAGGGAAGACAATCTGGTGGAGTCTTGGTTCATTGCTTTGCTGGAATATCCAGAAGTGTAACCATTACAGTTGCCTACCTGATGAAAAAGCGAGGTATGAACCTAACACAAGCAATGGAACACGTCAAGAGTAGACGATCACAAGCAGCTCCGAACATTGGTTTCATGGTTCAACTCAAGGAATTTGAAACAGCTCTTCAAGCTCGCAGAGTTGATGAAATGAAACTGTCAAATGTTTAA 540 40.0 MDHDDSSVRLSALWNIIALKRMLKVDRIPCQIEEGLFLGSVGAAHNKDQLKKLNITHILTIACSLPPANPNDFVYKVVGVVDSRDADIKQHFDDCFNFIDEGRQSGGVLVHCFAGISRSVTITVAYLMKKRGMNLTQAMEHVKSRRSQAAPNIGFMVQLKEFETALQARRVDEMKLSNV 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4798643 4801722 - PI0000207.3 Cmetu11g1536 370268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1536 179 SMART dsp_5 28 165 IPR020422 GO:0006470|GO:0008138
Cmetu11g1536 179 Pfam Dual specificity phosphatase, catalytic domain 36 164 IPR000340 GO:0008138|GO:0016311
Cmetu11g1536 179 ProSiteProfiles Dual specificity protein phosphatase domain profile. 28 168 IPR020422 GO:0006470|GO:0008138
Cmetu11g1536 179 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 29 168 IPR029021 -
Cmetu11g1536 179 CDD DSP 29 161 - -
Cmetu11g1536 179 FunFam Dual specificity phosphatase 12 30 178 - -
Cmetu11g1536 179 Gene3D Protein tyrosine phosphatase superfamily 22 176 IPR029021 -
Cmetu11g1536 179 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 27 170 - -
Cmetu11g1536 179 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 90 146 IPR000387 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1536 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu01g1484 . 117 377 Protein tyrosine phosphatase (PTP) family AT1G71860 70.2 1.9e-109 392.9
Cmetu02g0933 . 109 926 Protein tyrosine phosphatase (PTP) family AT5G23720 65.9 1.3e-295 1012.7
Cmetu11g1536 . 20 167 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 1.6e-42 169.5
Cmetu05g0500 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.3e-71 265.4
Cmetu10g0979 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 1.3e-116 416.4
Cmetu10g1171 . 29 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 1.2e-109 393.3
Cmetu04g0638 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 2.2e-203 705.3
Cmetu11g0212 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 1.5e-74 276.6
Cmetu05g0487 . 45 241 Protein tyrosine phosphatase (PTP) family AT2G32960 64.2 1.7e-70 263.1
Cmetu02g1280 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.8e-55 211.5
Cmetu06g0363 . 8 304 Protein tyrosine phosphatase (PTP) family AT2G35680 60.5 1.2e-100 363.6
Cmetu05g1458 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.5e-79 293.5
Cmetu06g0363 . 8 183 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.3e-43 173.3
Cmetu11g0212 . 38 214 Protein tyrosine phosphatase (PTP) family AT4G03960 73.4 3.2e-77 285.0
Cmetu05g0487 . 43 241 Protein tyrosine phosphatase (PTP) family AT4G03960 62.3 3.9e-67 251.5
Cmetu02g1280 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.1e-57 219.2
Cmetu02g1280 . 7 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.4 1.6e-79 292.7
Cmetu11g0212 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 2.7e-55 212.2
Cmetu05g0487 . 39 230 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 4.4e-50 194.9
Cmetu10g0718 . 1 175 Protein tyrosine phosphatase (PTP) family AT3G55270 59.9 1.9e-53 208.0
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu01g2130 . 11 610 Protein tyrosine phosphatase (PTP) family AT3G19420 64.8 3.2e-221 765.0
Cmetu08g1753 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.5e-197 684.5
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu11g0267 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.0 9.1e-72 267.3
Cmetu06g0725 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 7.3e-113 404.1
Cmetu08g1543 . 1 642 Protein tyrosine phosphatase (PTP) family AT3G09100 66.9 2.4e-262 901.7
Cmetu08g1543 . 5 642 Protein tyrosine phosphatase (PTP) family AT5G01290 62.4 2.5e-235 812.0
Cmetu08g1543 . 86 642 Protein tyrosine phosphatase (PTP) family AT5G28210 54.3 2.0e-173 606.3