Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1551 ATGGCTTCTAATTCTCCTTCTTCAAATCGCCTTCGTGTAGGCTACGCTTTTCCCCCAAACAAAGAGCGCAATGTAATTCGGCCATCTCTAATCGACTACGCCAAACTCCATGGCGTCGACCTCGTTCGTATCGACCTCCAAACGCCGCTACTCCACCAAGGTCCATTCCACTGCATCATTCACAAACTCTACGACGATGCTTGGGCAGAGAATCTCCAAGACTTCGCCTCCAAGAATCCTGACGTCGTCGTCGTAGATCGGCCGGACCTGATCTCTAAACTCTACAACAGAGTCTCCATGCTTGATGTAGTGAGCCAGGTGAAGGTTTCCGACTCTGGCGTAAGAATCGAGGTACCGAAACAGATACTTGTGAAACAGGAGGATGAAGCAATCGATTTGATTAAGAATTTAGAGTTGAAATTTCCAGTGATTGTTAAGCCGATGGAGTCAGATGGAAGTGCAAAATCACACGAAATGTCTCTAGTCTTCAACCGACGCGGATTGAAGGATTTGAACACGCCCGTACTTCTACAGGAATTTGTGAACCACGGCGGAGTAATGTTCAAAATCTACGTTGCAGGAGATCAATCGGTGTGTGTTAAGCGGAAATCGCTGCCGGATGTGGCGGAGACAGAGGAAGAACTAGAGAAGAAAACAGAGGGCGCGATGAAGTTTTCGCAGATATCTAGGGCAGAGGAGAAGAGTGAAAAATGCAACGGGGAGGCGAAAAAGGAGGAGGAAGAGATTGAAATGCCGCCGGAGAAGATAGTGAGGGAGGTATCGAGAGGGTTGAAGGAAGCGATGGGGATTAGGCTGTTCAATTTTGACATGATAAGAGATGGAAATGGAACGTATTATGTGATTGATATAAACTACTTGCCAGGATTTGCAGTTCTGCCGGAGTATGAGCCGTTTCTGACGAAGTTCTTCAAGGAAGTTACGGAGAAGAAGGTGGAAGAGGTGGCGGATTCCGGCATTGAAAACGATAAATCCAAACCACGGTGCTGCAGCTGTTTCCATTGA 1023 47.31 MASNSPSSNRLRVGYAFPPNKERNVIRPSLIDYAKLHGVDLVRIDLQTPLLHQGPFHCIIHKLYDDAWAENLQDFASKNPDVVVVDRPDLISKLYNRVSMLDVVSQVKVSDSGVRIEVPKQILVKQEDEAIDLIKNLELKFPVIVKPMESDGSAKSHEMSLVFNRRGLKDLNTPVLLQEFVNHGGVMFKIYVAGDQSVCVKRKSLPDVAETEEELEKKTEGAMKFSQISRAEEKSEKCNGEAKKEEEEIEMPPEKIVREVSRGLKEAMGIRLFNFDMIRDGNGTYYVIDINYLPGFAVLPEYEPFLTKFFKEVTEKKVEEVADSGIENDKSKPRCCSCFH 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26220513 26221535 - PI0026620.1 Cmetu11g1551 370283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1551 340 ProSiteProfiles ATP-grasp fold profile. 108 322 IPR011761 GO:0005524|GO:0046872
Cmetu11g1551 340 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 12 91 IPR041429 -
Cmetu11g1551 340 Gene3D - 2 113 - -
Cmetu11g1551 340 PIRSF ITPK 1 325 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cmetu11g1551 340 Gene3D - 221 316 - -
Cmetu11g1551 340 Gene3D - 121 220 - -
Cmetu11g1551 340 FunFam Inositol-tetrakisphosphate 1-kinase 121 222 - -
Cmetu11g1551 340 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 88 300 - -
Cmetu11g1551 340 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 114 311 IPR040464 -
Cmetu11g1551 340 Coils Coil 228 248 - -
Cmetu11g1551 340 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 8 318 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1551 K00913 - - csv:101223134 577.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0635 Cmetu-Chr4:32441969 Cmetu11g1551 Cmetu-Chr11:26220513 2.80E-74 dispersed
Cmetu11g0744 Cmetu-Chr11:26195570 Cmetu11g1551 Cmetu-Chr11:26220513 2.30E-93 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g439 . . . . Bpe07g00393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00292 . . . . . . . . . . . Sed01g0355 . Cmo20g00902 . . . . . . Bhi10g02090 Tan05g1437 Cmetu11g1551 . Hepe08g1091 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013619 0 1 0 0 0 1 0 1 1 1 1 1 2 1 1 2 1 0 0 1 1 1 1 1 1 1 1 2 1 0 25