Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1679 ATGGAAGAGTTCCTAGACAATATACCTCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTTCAGCTTATTATCCCTGTCGAGTCCGCTCATCGAGCCATTTCATATCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGCTAAGGTTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAGCTAGAGGATTTAGAGATACGACTGGCTGATCATGAGCATGAGCTGATTGAAATGAACTCTAACAGTGAGAAACTTCGACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAGCTATGTTGAGGATGGATCATTACTTGAACAGGACATGAGACCTGGACCATCCAACCAATCTGGTTTGAGATTTATTTGTGGAATTATTTGTAAATCCAAAGTTCTTAGATTTGAAAGGATGTTGTTCCGTGCAACAAGGGGAAATATGCTTTTCAATCAGGCACCAGCAGATGTACAGATCATGGATCCCATATCTACGGAAATGGTTGAGAAAACAGTATTTGTTGTGTTTTTCTCTGGGGAGCAGGCCAAAAACAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAGAGGCAGATAACTAGAGAAGTGTCATCTCGCCTCACGGAACTTGAGGCCACCTTAGATTCTGGGACCCGACACCGAAATGAGGCTCTTGCATCAATAGGGTTTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATATGTTAAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGATGGTGCCCAATCTTTGCAAAAACTCAGATTCAAGAGGCACTACAGCGAGCAACATTTGATAGTAGTTCACAAGTGGGGATAATATTTCATGTGATGGATACGGTTGAATCCCCTCCTACATATTTTAGAACAAACCGTTTGACAAATGCTTTTCAAGAAATTGTTGACGCCTATGGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGCTTGTTGCTTGGAGCTTTAGTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGCCGCTATGTTCTTCTTTTGATGTCCCTATTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCATATCATATATTTGGTGCATCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCCCACACTGTTGGCTTAGTTAAATACCGTGATCCCTATCCATTTGGTGTTGACCCAAGCTGGCGTGGAAGTCGTTCAGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGATGTCTATCTTGTTGGGTATAGCTCAAATGAACTTAGGGATCATTTTGAGTTATTTTAATGCCCGTTTTACTGGAAGCTCAATTGATATCAGGTACCAGTTTGTACCACAAGTGATCTTCCTTAACAGCCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTGCACTGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGAGGATCTTGGTGAGAACGAATTGTTTTGGGGCCAAAGACCTCTTCAAATTATATTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATTTTGAAAAAGATGCACACAGAGAGATTTCAAGGCCGTACTTATGGAATGCTTGGAACCTCTGAGATTGATCTTGAGGTGGAACCTGATTCAGCAAGGCAACACCAAGAGGACTTCAATTTTAGTGAGATTTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCAAATACAGCATCGTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTGTCAACAGTTTTCTATGAGAAAGTACTCCTCTTAGCTTGGGGGTATGACAGCTTTGTCATTCGGCTGATTGGTTTAGCTGTTTTTTCGTTTGCAACTGCTTTCATACTTCTTATGATGGAGACCCTTAGTGCCTTCCTTCATGCTTTGCGTCTTCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGACGGCCACAAGTTCAAACCTTTTTCCTTTGCCTCCATCGACGAGGACGAAGATTAA 2460 40.16 MEEFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDSYVEDGSLLEQDMRPGPSNQSGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPISTEMVEKTVFVVFFSGEQAKNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDSGTRHRNEALASIGFHLIKWMNMVRREKAVYDMLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTVESPPTYFRTNRLTNAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDNSCSDAHTVGLVKYRDPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGIAQMNLGIILSYFNARFTGSSIDIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFEDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKMHTERFQGRTYGMLGTSEIDLEVEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGHKFKPFSFASIDEDED 819
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 6061337 6071915 + PI0001463.1 Cmetu11g1679 370411

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1679 819 Coils Coil 93 127 - -
Cmetu11g1679 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220|GO:0046961
Cmetu11g1679 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmetu11g1679 819 PANTHER VACUOLAR PROTON ATPASES 13 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1679 K02154 - - csv:101216514 1624.37
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g1679 Cmetu-Chr11:6061337 Cmetu03g1529 Cmetu-Chr3:2134162 2.30E-299 transposed
Cmetu11g1679 Cmetu-Chr11:6061337 Cmetu01g1260 Cmetu-Chr1:5861393 2.30E-299 transposed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1891 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1618.2
Cmetu11g1679 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.8
Cmetu03g1529 . 1 803 Primary Pumps ATPases(2) AT2G28520 62.9 4.5e-295 1010.7
Cmetu01g1260 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.2 1.3e-294 1009.2
Cmetu01g1260 . 7 818 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1226.8
Cmetu03g1529 . 1 808 Primary Pumps ATPases(2) AT2G21410 73.1 0.0e+00 1194.9
Cmetu11g1679 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.3 3.7e-297 1017.7
Cmetu01g1260 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1233.0
Cmetu03g1529 . 1 808 Primary Pumps ATPases(2) AT4G39080 73.8 0.0e+00 1188.7
Cmetu11g1679 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.3 3.1e-296 1014.6
Cmetu03g2002 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu03g1404 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu07g1091 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu03g1404 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 8.8e-67 250.4
Cmetu07g1091 . 1 165 Primary Pumps ATPases(2) AT1G75630 81.0 1.5e-66 249.6
Cmetu03g2002 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.2
Cmetu03g1404 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu07g1091 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu03g2002 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.3e-73 271.9
Cmetu07g1091 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.2
Cmetu03g1404 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.7e-52 201.1
Cmetu03g2002 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.4e-52 200.3
Cmetu03g1752 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.9 1.5e-70 263.1
Cmetu04g1520 . 1 175 Primary Pumps ATPases(2) AT2G25610 83.4 2.5e-70 262.3
Cmetu03g2002 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu03g1404 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu07g1091 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu03g1752 . 1 180 Primary Pumps ATPases(2) AT4G32530 75.2 1.2e-74 276.6
Cmetu04g1520 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 8.6e-73 270.4
Cmetu12g0878 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.7 0.0e+00 1672.1
Cmetu12g0878 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.0 0.0e+00 1681.0
Cmetu03g1891 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1618.2
Cmetu12g0878 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1318.5
Cmetu02g2076 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.4e-57 219.2
Cmetu01g2368 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 2.8e-268 921.0
Cmetu09g1575 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.5 9.0e-182 633.3
Cmetu05g1761 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.4 1.4e-117 419.5
Cmetu04g0830 . 3 454 Primary Pumps ATPases(2) AT3G42050 80.1 5.0e-208 720.7
Cmetu03g1404 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu07g1091 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu03g2002 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.3e-73 271.9
Cmetu01g2368 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 4.4e-269 923.7
Cmetu06g0838 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 7.1e-66 247.3
Cmetu01g2368 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 5.8e-266 913.3
Cmetu11g1679 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.8
Cmetu03g1529 . 1 803 Primary Pumps ATPases(2) AT2G28520 62.9 4.5e-295 1010.7
Cmetu01g1260 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.2 1.3e-294 1009.2
Cmetu04g2429 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.7e-192 666.8
Cmetu06g0838 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.8 2.2e-90 328.9
Cmetu01g0195 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1171.0
Cmetu01g2368 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 2.8e-268 921.0
Cmetu01g2368 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 4.4e-269 923.7
Cmetu01g2368 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 5.8e-266 913.3
Cmetu09g1575 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.5 9.0e-182 633.3
Cmetu05g1761 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.4 1.4e-117 419.5
Cmetu06g0838 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.8 2.2e-90 328.9
Cmetu06g0838 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.5 5.4e-76 281.2
Cmetu06g0838 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 7.1e-66 247.3
Cmetu02g2076 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.4e-57 219.2
Cmetu04g0830 . 3 454 Primary Pumps ATPases(2) AT3G42050 80.1 5.0e-208 720.7
Cmetu11g1679 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.8
Cmetu03g1529 . 1 803 Primary Pumps ATPases(2) AT2G28520 62.9 4.5e-295 1010.7
Cmetu01g1260 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.2 1.3e-294 1009.2
Cmetu01g1260 . 7 818 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1226.8
Cmetu03g1529 . 1 808 Primary Pumps ATPases(2) AT2G21410 73.1 0.0e+00 1194.9
Cmetu11g1679 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.3 3.7e-297 1017.7
Cmetu01g1260 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1233.0
Cmetu03g1529 . 1 808 Primary Pumps ATPases(2) AT4G39080 73.8 0.0e+00 1188.7
Cmetu11g1679 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.3 3.1e-296 1014.6
Cmetu03g2002 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu03g1404 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu07g1091 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu07g1091 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.2
Cmetu03g1404 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.7e-52 201.1
Cmetu03g2002 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.4e-52 200.3
Cmetu03g2002 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu03g1404 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu07g1091 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu03g1404 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 8.8e-67 250.4
Cmetu07g1091 . 1 165 Primary Pumps ATPases(2) AT1G75630 81.0 1.5e-66 249.6
Cmetu03g2002 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.2
Cmetu03g1404 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu07g1091 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu03g2002 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.3e-73 271.9
Cmetu03g1752 . 1 180 Primary Pumps ATPases(2) AT4G32530 75.2 1.2e-74 276.6
Cmetu04g1520 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 8.6e-73 270.4
Cmetu03g1752 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.9 1.5e-70 263.1
Cmetu04g1520 . 1 175 Primary Pumps ATPases(2) AT2G25610 83.4 2.5e-70 262.3
Cmetu04g2429 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 5.8e-199 690.3
Cmetu04g2429 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.7e-192 666.8
Cmetu12g0878 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.7 0.0e+00 1672.1
Cmetu12g0878 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1318.5
Cmetu03g1891 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1618.2
Cmetu12g0878 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.0 0.0e+00 1681.0
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115