Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1734 ATGGATGACATCGACATTCTGAAATCGACACTCTCCCAATCCGACATGTCGTCCACGTTCTTCCCAAACAACACCCCCAATTGTCCTCAAGTACTCCCAATAATCCCACCGCCTTATTTCTCCGATTACTCCCCGCCGACTGGAACCTCCTTATTCCAAACCCCAACAATAATCCCGGAAACTCCGGCTCGTCAGAGGAGGAGCGGGGTAAGTGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTTAGAATAGCTGCGATGCAACCGGTGGAGATTGATCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAATGTGAGAATATCGAAAGATCCACAGAGTGTGGCGGCGAGACACCGGCGGGAAAGGATTAGCCAGAAAATTAGAATTTTACAGCGGCTGGTGCCCGGCGGGACGAAGATGGATACGGCGTCGATGCTGGATGAGGCGGTGCATTACCAGGCTGGGTTTAATTATAATAATAATAATAATAATAACAACAACAACAATTTTAATAATTTTGTTAATTCGGCGAATTTAAATTACGCTTCTGCCCTTTTCAAGGCTTGTCAAATAATGCCTGCTTCTTTGCAAATGCAGTCATGA 606 47.69 MDDIDILKSTLSQSDMSSTFFPNNTPNCPQVLPIIPPPYFSDYSPPTGTSLFQTPTIIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYQAGFNYNNNNNNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29263595 29264235 - PI0016898.1 Cmetu11g1734 370466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1734 201 Gene3D - 103 170 IPR036638 GO:0046983
Cmetu11g1734 201 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 60 153 IPR045843 GO:0003700|GO:0006355
Cmetu11g1734 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 153 IPR036638 GO:0046983
Cmetu11g1734 201 SMART finulus 114 163 IPR011598 GO:0046983
Cmetu11g1734 201 CDD bHLH_AtIND_like 109 153 - -
Cmetu11g1734 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 157 IPR011598 GO:0046983
Cmetu11g1734 201 Pfam Helix-loop-helix DNA-binding domain 117 153 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1734 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0274 Cmetu-Chr7:22544094 Cmetu11g1734 Cmetu-Chr11:29263595 5.70E-33 dispersed
Cmetu08g0697 Cmetu-Chr8:18424281 Cmetu11g1734 Cmetu-Chr11:29263595 1.70E-29 dispersed
Cmetu08g1933 Cmetu-Chr8:14931621 Cmetu11g1734 Cmetu-Chr11:29263595 6.30E-11 dispersed
Cmetu09g0574 Cmetu-Chr9:11696291 Cmetu11g1734 Cmetu-Chr11:29263595 6.90E-09 dispersed
Cmetu11g1734 Cmetu-Chr11:29263595 Cmetu01g2566 Cmetu-Chr1:23359386 1.00E-06 dispersed
Cmetu11g1734 Cmetu-Chr11:29263595 Cmetu03g0536 Cmetu-Chr3:1285179 5.70E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1280 . . Bda04g00329 Bda10g00372 . . Bma09g00395 . . . Cma03g01089 Cma07g00796 Car03g00980 Car07g00781 Sed14g0223 Cpe19g00534 Cpe10g00343 Bhi03g01358 Tan03g1315 Cmetu11g1734 . Hepe04g1118 . . Cla01g01522 Cam01g1591 Cec04g1234 Cco04g1305 Clacu01g1616 Cmu01g1502 Cre04g1180 . . Cone8ag1461 . Lsi01g01144 . . Cme08g01078 . Blo06g00200 . . Bpe10g00254 Bpe06g00258 . . . Cmo03g01075 Cmo07g00819 . . . . . . . . . . . . . . . . . . . . . Csa06g02787 Chy02g01048 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000991 3 2 1 3 3 3 3 3 3 2 3 2 3 3 3 3 3 4 3 3 3 3 2 3 2 3 3 3 4 2 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8813 PF00010 HLH 3.90E-05 No_clan Cmetu TF