Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1775 ATGGCAAGCTTATTGAAGTTATTCAGAAGCTGTTCTGGAAGGCGACCGTCCAAAAACACTTCCTTTTCCATACAAATCAAAGAAAGGTCCAATTCTTCCTTACCCTCTTCAAAGCACTTCCGCCCAAACTTGGAGGAGATCAAATGGGCGTTCGAGAAGTTTGACTCGAACAAGGATGGAAAGATCTCATTTGAGGAGTACAAGGAGGCTCACCGAGGATTGGCTGGAAGCAAAGAGATCACAGACGCAGAGGCAGAGAAATCATTCAAGCTTGTGGATGCAGATGGCGATGGATACGTGGATTTGAAGGAGTTCGTGGAACTGTACACGATGAGCAGCGGGGAAGTGAAGGTCAGCGACATCGAAAGTGCCTTCAAAGTGTATGATTCTAATGGAGATGGGAAGATAAGCGCAGAGGAAGTGATGGGGATCATGAAGGTATTGGGGGAGAACACCACCCTAAAGGCTTGCAAGCAAATGGTGAAGGGTGTGGACAGGGATGGGGATGGCTTTATTGATATCCAAGAGTTTTCTAAGCTCATGGGTACATATTCGAGTAAGTTTCAAAATTAA 573 45.72 MASLLKLFRSCSGRRPSKNTSFSIQIKERSNSSLPSSKHFRPNLEEIKWAFEKFDSNKDGKISFEEYKEAHRGLAGSKEITDAEAEKSFKLVDADGDGYVDLKEFVELYTMSSGEVKVSDIESAFKVYDSNGDGKISAEEVMGIMKVLGENTTLKACKQMVKGVDRDGDGFIDIQEFSKLMGTYSSKFQN 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29338411 29339981 + PI0021588.1 Cmetu11g1775 370507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1775 190 Gene3D - 115 190 - -
Cmetu11g1775 190 ProSitePatterns EF-hand calcium-binding domain. 165 177 IPR018247 -
Cmetu11g1775 190 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 120 181 - -
Cmetu11g1775 190 MobiDBLite consensus disorder prediction 13 39 - -
Cmetu11g1775 190 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Cmetu11g1775 190 Gene3D - 10 114 - -
Cmetu11g1775 190 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Cmetu11g1775 190 FunFam calmodulin-like protein 3 114 185 - -
Cmetu11g1775 190 SUPERFAMILY EF-hand 44 182 IPR011992 -
Cmetu11g1775 190 MobiDBLite consensus disorder prediction 12 39 - -
Cmetu11g1775 190 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Cmetu11g1775 190 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Cmetu11g1775 190 Pfam EF-hand domain pair 45 109 IPR002048 GO:0005509
Cmetu11g1775 190 Pfam EF-hand domain pair 120 181 IPR002048 GO:0005509
Cmetu11g1775 190 CDD EFh 46 108 IPR002048 GO:0005509
Cmetu11g1775 190 CDD EFh 120 181 IPR002048 GO:0005509
Cmetu11g1775 190 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Cmetu11g1775 190 ProSiteProfiles EF-hand calcium-binding domain profile. 116 151 IPR002048 GO:0005509
Cmetu11g1775 190 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Cmetu11g1775 190 SMART efh_1 120 148 IPR002048 GO:0005509
Cmetu11g1775 190 SMART efh_1 84 112 IPR002048 GO:0005509
Cmetu11g1775 190 SMART efh_1 46 74 IPR002048 GO:0005509
Cmetu11g1775 190 SMART efh_1 156 184 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1775 K13448 - - csv:101205694 360.533
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g423 . . . . . . . . Cmo19g00627 Cmo11g01358 . . . . Sed05g3402 Cpe04g00276 Cpe15g00493 Bhi05g01126 Tan02g0902 Cmetu11g1775 . Hepe02g0581 . . Cla02g00595 Cam02g0624 Cec02g0624 Cco02g0639 Clacu02g0628 Cmu02g0624 Cre02g0948 Cone11ag0284 . . . . Csa07g00766 . Cme01g00043 . . . . . . . . . Cmo02g00564 . . Cma19g00609 Car11g01088 . . . . . . . . . . . . . . . . . . . Chy01g00049 Cme11g00303
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011002 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 0 31