Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1833 ATGGATGCACAAGCTTCGATAGCCAATGGCACAGACGATACGATCGTCTGCTACGCGCCGACGATGATTACGACAAATGGGGTGTGGCAAGGTGACAACCCTTTGGATTATTCTCTCCCTCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCATTTTGGTTTTCATCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCGGTACTAGGGAGGAGTGCTAAATTTGCCAACACAGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCAAATGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTTGAAATGGATCTCTCAGTGATTCGTCGAACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGGATGATACTTCCGTTCGGAATAGGAGCTGCCTTTTCATTCCAATTGCACAAAGAAGGTCAAAAATTGAACTACAACACTTACATTATGTTTCTTGGTATTGCGCTCTCGGTGACTGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTTATAAATTCAGAGCTTGGAAGGATGGCTATGGCATCTGCACTTTTCAATGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCTGAGAATGATTCCTCATCTTTGGCTTCATTATGGGTTGTATTGTCAAGTGCAGGCTTTGTTTTGTTTTGCATCTTCATCGTTAGACCGACGATCTCATGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTGAGTGAGTTCTACATATGTTTGATTCTCACAGGGGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCTGTTTTTGGAGCTTTTGTGTTTGGTTTAGTTATCCCAAATGGTTCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCGGGCCTTTTGCTTCCTCTTTTCTTCGCAATAAGTGGGCTTAAGACTAATGTGTCTAGCGTAGACGGATTATTCGCTTGGATATCTATTCTATGTATAACTCTCCTTGCTTTCATTGGCAAAGTCATAGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGTGAAGGCGTCACATTAGGCTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAATGTCGGAAAGGACCAGAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCTCTCATTATGACAGGGATAATAACACCAGTAGTTACCGTAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAATTTAGAGTATTAGTTTGTATACACACACCTCGAAATGTGCCAACAATCATCAACCTCCTTGATGCTTCCCATCCAACTAAAAGATCCCCAATTTGCATTTACGTGCTACACTTGGTTGAACTCACAGGTCGAGCCTCCGCCATGCTCATCGTCCACAACACCAGAAAATCAGGCCGCCCTGCATTAAATCGAACACAAGCTCAATCAGATCACATCATTAATGCATTCGAGAACTATGAACAGCACGTTGATTGCGTCTCTGTTCAACCTCTCACAGCCATTTCCCCTTACTCCACAATGCACGAAGACATTTGCAATTTAGCAGAAGATAAACGAGTTGCCTTCATAATCATCCCATTCCATAAACAACAAACAGTGGATGGAGGCATGGAAGCTACAAATCCAGCATTTAGATTGGTAAACCAAAATGTATTAGCTAATGCCCCTTGCTCCGTCGGAATCCTAGTCGATCGAGGCTTAAACGGCGCGAATCGAGTCGCATCAAACAAAGCAACTCATTATAACATAGTCGTGTTGTTCTTTGGTGGACAAGATGATAGAGAAGCCCTATCATACGCATGGAGAATGTCAGAACATCCAGGAGTGAATTTAACCGTAATGCGATTCATCGCTGCACAAGAAATAATGGAACCAAAACCAAAAGAAAACATATCAAGAATTTCAACAATGGAAACGGAAATTAACAGAGATAGGAAAGTGGACGAAGATTATATAAACGAATTTAGGGCAAGGAACCCAAACAGTGAGTCAATTAATTACACAGAAAAAGTGTTGAACAACGGCGAAGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTTGGTAGAGGTGAATCTCACATATCACCTCTCACTGCCGGACTAACGGACTGGAGTGAATGTCCAGAGTTGGGAGCAATAGGCGATTTGCTAGCCTCATCGGATTTTGCAGCAACGACTTCAGTTTTGGTAGTGCAACAGTTCGGAGCAGCAATGGCGGTGGAGCATGGAGAAGAAGAAGAAGGTACACCACATAATCATGATCCAAGTGATCCCTACTACTTGAGATCCATGAATTTGAGGCAACATACTCCATCAAGAGCTCAAATCATTTATGATACATGA 2511 42.37 MDAQASIANGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRILVFILKPFRQPRVISEILGGVILGPSVLGRSAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKEGQKLNYNTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSAGFVLFCIFIVRPTISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVSSVDGLFAWISILCITLLAFIGKVIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALIMTGIITPVVTVIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGANRVASNKATHYNIVVLFFGGQDDREALSYAWRMSEHPGVNLTVMRFIAAQEIMEPKPKENISRISTMETEINRDRKVDEDYINEFRARNPNSESINYTEKVLNNGEETVAAIRSMDDAHDLFIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAMAVEHGEEEEGTPHNHDPSDPYYLRSMNLRQHTPSRAQIIYDT 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30531655 30534634 - PI0005590.1 Cmetu11g1833 370565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1833 836 FunFam Cation/H(+) antiporter 15 41 441 - -
Cmetu11g1833 836 Gene3D - 478 759 - -
Cmetu11g1833 836 PANTHER CATION/H + ANTIPORTER 16 789 - -
Cmetu11g1833 836 Gene3D - 41 439 IPR038770 -
Cmetu11g1833 836 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1833 K26731 - - csv:101219265 1558.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0797 Cmetu-Chr1:26117769 Cmetu11g1833 Cmetu-Chr11:30531655 2.10E-95 dispersed
Cmetu06g1439 Cmetu-Chr6:21287320 Cmetu11g1833 Cmetu-Chr11:30531655 4.90E-129 dispersed
Cmetu06g2321 Cmetu-Chr6:21277917 Cmetu11g1833 Cmetu-Chr11:30531655 1.40E-131 dispersed
Cmetu07g2010 Cmetu-Chr7:5065164 Cmetu11g1833 Cmetu-Chr11:30531655 8.30E-210 dispersed
Cmetu08g1910 Cmetu-Chr8:16233876 Cmetu11g1833 Cmetu-Chr11:30531655 8.90E-185 dispersed
Cmetu09g0416 Cmetu-Chr9:10797687 Cmetu11g1833 Cmetu-Chr11:30531655 7.90E-119 dispersed
Cmetu10g0835 Cmetu-Chr10:13649216 Cmetu11g1833 Cmetu-Chr11:30531655 3.10E-131 dispersed
Cmetu11g0150 Cmetu-Chr11:7642553 Cmetu11g1833 Cmetu-Chr11:30531655 3.70E-131 dispersed
Cmetu11g1833 Cmetu-Chr11:30531655 Cmetu12g1231 Cmetu-Chr12:24690306 6.10E-106 dispersed
Cmetu11g1833 Cmetu-Chr11:30531655 Cmetu08g1461 Cmetu-Chr8:2970968 1.90E-195 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu11g1833 . 11 819 Antiporter Super Family AT2G13620 72.2 0.0e+00 1163.3
Cmetu07g2010 . 11 785 Antiporter Super Family AT2G13620 50.4 8.5e-209 724.2
Cmetu08g1910 . 77 848 Antiporter Super Family AT3G53720 69.0 2.2e-291 998.4
Cmetu07g2010 . 1 785 Antiporter Super Family AT5G41610 66.9 1.6e-297 1018.8
Cmetu07g1694 . 1 759 Antiporter Super Family AT5G41610 66.7 6.7e-291 996.9
Cmetu07g0419 . 7 790 Antiporter Super Family AT5G41610 64.0 2.3e-283 971.8
Cmetu08g1910 . 9 833 Antiporter Super Family AT5G41610 50.5 4.1e-208 721.8
Cmetu07g2010 . 11 783 Antiporter Super Family AT4G23700 66.2 9.8e-290 993.0
Cmetu07g0419 . 8 790 Antiporter Super Family AT4G23700 62.4 3.6e-276 948.0
Cmetu07g1694 . 9 776 Antiporter Super Family AT4G23700 60.7 5.2e-267 917.5
Cmetu07g2010 . 4 783 Antiporter Super Family AT3G17630 62.9 3.1e-272 934.9
Cmetu07g0419 . 6 790 Antiporter Super Family AT3G17630 59.3 4.0e-256 881.3
Cmetu07g1694 . 11 759 Antiporter Super Family AT3G17630 60.7 4.9e-254 874.4
Cmetu08g1910 . 9 819 Antiporter Super Family AT3G17630 52.8 3.5e-207 718.8
Cmetu07g2010 . 4 785 Antiporter Super Family AT1G64170 57.5 3.1e-240 828.6
Cmetu07g0419 . 3 790 Antiporter Super Family AT1G64170 54.7 2.6e-226 782.3
Cmetu07g1694 . 15 764 Antiporter Super Family AT1G64170 54.7 1.2e-218 756.9
Cmetu11g1833 . 11 819 Antiporter Super Family AT2G13620 72.2 0.0e+00 1163.3
Cmetu07g2010 . 11 785 Antiporter Super Family AT2G13620 50.4 8.5e-209 724.2
Cmetu07g2010 . 4 785 Antiporter Super Family AT1G64170 57.5 3.1e-240 828.6
Cmetu07g0419 . 3 790 Antiporter Super Family AT1G64170 54.7 2.6e-226 782.3
Cmetu07g1694 . 15 764 Antiporter Super Family AT1G64170 54.7 1.2e-218 756.9
Cmetu07g2010 . 11 783 Antiporter Super Family AT4G23700 66.2 9.8e-290 993.0
Cmetu07g0419 . 8 790 Antiporter Super Family AT4G23700 62.4 3.6e-276 948.0
Cmetu07g1694 . 9 776 Antiporter Super Family AT4G23700 60.7 5.2e-267 917.5
Cmetu07g2010 . 1 785 Antiporter Super Family AT5G41610 66.9 1.6e-297 1018.8
Cmetu07g1694 . 1 759 Antiporter Super Family AT5G41610 66.7 6.7e-291 996.9
Cmetu07g0419 . 7 790 Antiporter Super Family AT5G41610 64.0 2.3e-283 971.8
Cmetu08g1910 . 9 833 Antiporter Super Family AT5G41610 50.5 4.1e-208 721.8
Cmetu07g2010 . 4 783 Antiporter Super Family AT3G17630 62.9 3.1e-272 934.9
Cmetu07g0419 . 6 790 Antiporter Super Family AT3G17630 59.3 4.0e-256 881.3
Cmetu07g1694 . 11 759 Antiporter Super Family AT3G17630 60.7 4.9e-254 874.4
Cmetu08g1910 . 9 819 Antiporter Super Family AT3G17630 52.8 3.5e-207 718.8
Cmetu08g1910 . 77 848 Antiporter Super Family AT3G53720 69.0 2.2e-291 998.4
Cmetu01g0797 . 10 790 Antiporter Super Family AT3G52080 52.9 8.8e-235 810.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39