Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1856 ATGGGAGAAAATAAAAGATGTTTGATGGTAGCCATTCTTATTCAAGCCATCAACGCCGGCATGTTTTTTATTTCAAAGGCAGCATTGAACGCCGGAATGAACCATTATGTCTATATTTTTTATCGCCAGGTGGCCGCCACCGTCTTCCTTTCTCCCTTCGCCTTTTTTCGATGGAAAGACGCTCCACCTTTGACATTCTTTACCTTCTGCAAGATTTTTTTGCTCTCTTTGTTTGGGATAGCCATATGTTTAAATTTGTATGGAATTGCTCTCGTGTACACGTCAGCAACATTGGCTGCAGCAACTTCCAATTCTCTTCCTGTCATCACCTTCTTTGTCGCGCTTTTACTTAGGATGGAAGTGTTGAGGTTGAAGTCAGTAGCAGGAGCTGCAAAGCTAGCAGGAATATTATTTTGCATTGGTGGCGTTGGGATTTTGGCATTTTACAAAGGCCCCGAATTCAACTTGTTTAATTATCACCATCATCTCTTTTCCATCCATAAACCTAATGATAATCACCACTCTTCTTCTCTTCCATTGCCCAATTCTTGGTTGATGGGTTGCTTTTTGATGCTATCTTCCAATACCTTATGGAGTATTTGGGTTGTTCTTCAGGCATTGGTATTGAAAAGCTATTCTTCCAAGCTTCAATTGACAAATCTTCAATGTTTATTAAGTTCATTTCAATCATTTGGTATTGCCATTGCAATGGAAAGACAACCTCATAAATGGAAACTTGGTTGGAATCTTCAGCTTCTTGCAGTCATATATTGTGGCATGATGACCGCAGTTACGTTTTGTCTTCAAGCTTGGGTTATTGAGAAGAAAGGACCAGTTTATTTAGCCATGTCTACACCTTTGGCTCTTATCATCACAGTCTTCTTTTCTGCTCTATTTCTTGGTGAGAGTATCACTCTTGGAAGCACTTTAGGAGGAATATTGTTGGTGGGAGGTCTGTATTTTGTGCTATGGGGAAAGAGCAAAGAGCAAAAAATAAGTGAAGCATTGAAAGAAGGTACCAAAGAAGGCAACATGGAAGAAGGGAAAGAAATCACTAAATTAGATAATGAAACTACGACAAATCTTTAA 1089 39.3 MGENKRCLMVAILIQAINAGMFFISKAALNAGMNHYVYIFYRQVAATVFLSPFAFFRWKDAPPLTFFTFCKIFLLSLFGIAICLNLYGIALVYTSATLAAATSNSLPVITFFVALLLRMEVLRLKSVAGAAKLAGILFCIGGVGILAFYKGPEFNLFNYHHHLFSIHKPNDNHHSSSLPLPNSWLMGCFLMLSSNTLWSIWVVLQALVLKSYSSKLQLTNLQCLLSSFQSFGIAIAMERQPHKWKLGWNLQLLAVIYCGMMTAVTFCLQAWVIEKKGPVYLAMSTPLALIITVFFSALFLGESITLGSTLGGILLVGGLYFVLWGKSKEQKISEALKEGTKEGNMEEGKEITKLDNETTTNL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30340958 30345211 + PI0006804.1 Cmetu11g1856 370588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1856 362 Pfam EamA-like transporter family 9 131 IPR000620 GO:0016020
Cmetu11g1856 362 Pfam EamA-like transporter family 186 323 IPR000620 GO:0016020
Cmetu11g1856 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 328 - -
Cmetu11g1856 362 MobiDBLite consensus disorder prediction 337 362 - -
Cmetu11g1856 362 MobiDBLite consensus disorder prediction 337 354 - -
Cmetu11g1856 362 PANTHER WAT1-RELATED PROTEIN 8 337 IPR030184 GO:0016020|GO:0022857
Cmetu11g1856 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1856 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g1856 Cmetu-Chr11:30340958 Cmetu12g1382 Cmetu-Chr12:13677250 9.30E-43 dispersed
Cmetu11g0012 Cmetu-Chr11:30332575 Cmetu11g1856 Cmetu-Chr11:30340958 5.60E-160 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0761 . 1 756 Nodulin-like Gene Family AT4G19180 60.4 6.4e-248 854.0
Cmetu07g0473 . 24 280 Nodulin-like Gene Family AT3G45870 69.5 4.0e-94 341.7
Cmetu09g0252 . 12 377 Nodulin-like Gene Family AT3G28050 59.9 8.1e-119 424.1
Cmetu09g0252 . 127 335 Nodulin-like Gene Family AT3G28080 51.0 6.0e-51 198.0
Cmetu06g2203 . 1 340 Nodulin-like Gene Family AT5G47470 60.6 3.7e-106 382.1
Cmetu09g0984 . 10 346 Nodulin-like Gene Family AT5G47470 55.3 1.8e-97 353.2
Cmetu09g0252 . 10 335 Nodulin-like Gene Family AT5G40230 56.5 2.2e-95 346.3
Cmetu09g0252 . 12 335 Nodulin-like Gene Family AT5G40240 55.6 2.6e-93 339.3
Cmetu04g3048 . 19 276 Nodulin-like Gene Family AT3G53210 61.6 5.5e-85 311.2
Cmetu03g0602 . 16 283 Nodulin-like Gene Family AT3G53210 57.1 7.9e-84 307.4
Cmetu08g1598 . 99 317 Nodulin-like Gene Family AT2G37450 59.8 1.7e-73 273.1
Cmetu10g1442 . 98 357 Nodulin-like Gene Family AT2G37450 52.1 6.1e-68 254.6
Cmetu09g0742 . 99 332 Nodulin-like Gene Family AT2G37450 51.7 3.3e-61 232.3
Cmetu08g1598 . 12 317 Nodulin-like Gene Family AT2G37460 66.5 1.5e-115 413.3
Cmetu10g1703 . 8 335 Nodulin-like Gene Family AT2G37460 54.9 8.2e-98 354.4
Cmetu10g1442 . 11 332 Nodulin-like Gene Family AT2G37460 57.5 1.1e-97 354.0
Cmetu09g0742 . 1 332 Nodulin-like Gene Family AT2G37460 55.0 1.2e-93 340.5
Cmetu07g1398 . 1 323 Nodulin-like Gene Family AT2G37460 54.5 1.0e-92 337.4
Cmetu04g2893 . 12 339 Nodulin-like Gene Family AT2G37460 52.9 9.1e-89 324.3
Cmetu04g2280 . 7 332 Nodulin-like Gene Family AT2G37460 52.9 9.4e-86 314.3
Cmetu04g2970 . 14 339 Nodulin-like Gene Family AT2G37460 51.1 2.6e-83 306.2
Cmetu03g0602 . 1 396 Nodulin-like Gene Family AT1G75500 72.3 2.6e-160 562.0
Cmetu04g3048 . 19 393 Nodulin-like Gene Family AT1G75500 73.5 2.7e-149 525.4
Cmetu02g0510 . 7 278 Nodulin-like Gene Family AT1G75500 62.2 1.3e-95 347.1
Cmetu10g1759 . 12 367 Nodulin-like Gene Family AT1G60050 52.8 1.3e-95 347.1
Cmetu10g1703 . 8 349 Nodulin-like Gene Family AT2G39510 59.1 4.7e-114 408.3
Cmetu10g1442 . 12 333 Nodulin-like Gene Family AT2G39510 63.3 1.2e-112 403.7
Cmetu09g0742 . 12 333 Nodulin-like Gene Family AT2G39510 61.2 5.6e-107 384.8
Cmetu08g1598 . 13 317 Nodulin-like Gene Family AT2G39510 57.8 1.3e-100 363.6
Cmetu07g1398 . 1 348 Nodulin-like Gene Family AT2G39510 54.2 1.8e-97 353.2
Cmetu10g1501 . 14 350 Nodulin-like Gene Family AT2G39510 51.0 8.6e-92 334.3
Cmetu03g0781 . 31 349 Nodulin-like Gene Family AT2G39510 50.3 2.5e-91 332.8
Cmetu04g2893 . 16 337 Nodulin-like Gene Family AT2G39510 52.6 4.3e-91 332.0
Cmetu08g1667 . 16 342 Nodulin-like Gene Family AT2G39510 50.8 4.0e-89 325.5
Cmetu04g2970 . 16 337 Nodulin-like Gene Family AT2G39510 50.6 7.8e-85 311.2
Cmetu09g0252 . 12 335 Nodulin-like Gene Family AT4G15540 51.5 2.3e-86 316.2
Cmetu03g0781 . 20 277 Nodulin-like Gene Family AT4G08290 61.8 2.4e-86 315.8
Cmetu07g1398 . 1 243 Nodulin-like Gene Family AT4G08290 52.9 2.7e-69 259.2
Cmetu07g1398 . 2 334 Nodulin-like Gene Family AT4G08300 66.2 7.5e-120 427.6
Cmetu11g0012 . 11 264 Nodulin-like Gene Family AT5G64700 59.6 2.5e-77 285.8
Cmetu11g1856 . 3 258 Nodulin-like Gene Family AT5G64700 57.3 8.5e-70 260.8
Cmetu08g1166 . 1 255 Nodulin-like Gene Family AT5G64700 51.3 1.3e-62 236.9
Cmetu05g0105 . 1 368 Nodulin-like Gene Family AT4G30420 52.7 8.5e-103 370.9
Cmetu10g1501 . 10 337 Nodulin-like Gene Family AT5G07050 73.8 1.4e-140 496.5
Cmetu04g2893 . 10 339 Nodulin-like Gene Family AT5G07050 68.3 8.9e-127 450.7
Cmetu08g1667 . 10 342 Nodulin-like Gene Family AT5G07050 63.8 8.0e-120 427.6
Cmetu04g2280 . 3 332 Nodulin-like Gene Family AT5G07050 61.1 1.3e-109 393.7
Cmetu04g2970 . 1 339 Nodulin-like Gene Family AT5G07050 58.9 4.9e-109 391.7
Cmetu07g1398 . 1 316 Nodulin-like Gene Family AT5G07050 51.7 2.1e-91 333.2
Cmetu08g1667 . 13 360 Nodulin-like Gene Family AT3G56620 57.5 7.6e-104 374.4
Cmetu10g1501 . 15 357 Nodulin-like Gene Family AT3G56620 55.7 5.1e-100 361.7
Cmetu04g2893 . 12 370 Nodulin-like Gene Family AT3G56620 51.2 8.7e-100 360.9
Cmetu04g2970 . 12 352 Nodulin-like Gene Family AT3G56620 51.5 1.2e-93 340.5
Cmetu10g1759 . 3 373 Nodulin-like Gene Family AT1G70260 53.8 3.7e-103 372.1
Cmetu12g1382 . 3 331 Nodulin-like Gene Family AT1G09380 62.4 2.0e-112 402.9
Cmetu05g0415 . 6 288 Nodulin-like Gene Family AT1G09380 54.8 1.6e-85 313.5
Cmetu08g1667 . 13 355 Nodulin-like Gene Family AT2G40900 59.8 1.5e-107 386.7
Cmetu04g2893 . 12 342 Nodulin-like Gene Family AT2G40900 54.8 4.6e-104 375.2
Cmetu10g1501 . 15 349 Nodulin-like Gene Family AT2G40900 57.0 3.9e-103 372.1
Cmetu04g2280 . 6 335 Nodulin-like Gene Family AT2G40900 54.2 2.9e-98 355.9
Cmetu04g2970 . 12 369 Nodulin-like Gene Family AT2G40900 50.6 5.0e-98 355.1
Cmetu03g0602 . 16 361 Nodulin-like Gene Family AT3G18200 56.9 7.4e-107 384.4
Cmetu02g0510 . 1 278 Nodulin-like Gene Family AT3G18200 69.1 1.6e-101 366.7
Cmetu04g3048 . 19 356 Nodulin-like Gene Family AT3G18200 55.0 3.9e-100 362.1
Cmetu07g1398 . 2 340 Nodulin-like Gene Family AT1G44800 64.1 5.7e-120 427.9
Cmetu03g0781 . 28 370 Nodulin-like Gene Family AT1G44800 50.1 5.3e-94 341.7
Cmetu07g0473 . 108 374 Nodulin-like Gene Family AT5G45370 65.9 1.3e-95 346.7
Cmetu07g1398 . 1 293 Nodulin-like Gene Family AT1G21890 64.8 1.2e-108 390.2
Cmetu03g0781 . 28 327 Nodulin-like Gene Family AT1G21890 50.8 2.7e-87 319.3
Cmetu04g2893 . 15 315 Nodulin-like Gene Family AT1G21890 52.3 5.6e-85 311.6
Cmetu08g1667 . 5 321 Nodulin-like Gene Family AT1G21890 52.5 4.0e-83 305.4
Cmetu10g1501 . 12 314 Nodulin-like Gene Family AT1G21890 50.2 4.0e-83 305.4
Cmetu07g1491 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 1.1e-186 650.2
Cmetu07g1055 . 1 416 Nodulin-like Gene Family AT4G19450 68.2 3.1e-151 531.9
Cmetu11g0916 . 22 420 Nodulin-like Gene Family AT4G19450 57.0 1.0e-125 447.2
Cmetu02g0254 . 5 532 Nodulin-like Gene Family AT1G74780 59.3 1.1e-180 630.2
Cmetu02g0192 . 10 527 Nodulin-like Gene Family AT1G74780 56.4 3.4e-166 582.0
Cmetu02g2013 . 6 522 Nodulin-like Gene Family AT1G74780 56.2 2.4e-164 575.9
Cmetu11g0214 . 9 538 Nodulin-like Gene Family AT4G34950 69.1 3.4e-217 751.5
Cmetu01g1962 . 10 515 Nodulin-like Gene Family AT4G34950 66.1 1.1e-204 709.9
Cmetu03g0582 . 20 577 Nodulin-like Gene Family AT5G14120 68.2 1.3e-216 749.6
Cmetu11g0214 . 1 384 Nodulin-like Gene Family AT2G16660 67.0 1.3e-143 506.5
Cmetu01g1962 . 4 368 Nodulin-like Gene Family AT2G16660 67.3 1.2e-141 500.0
Cmetu10g0138 . 14 564 Nodulin-like Gene Family AT2G39210 71.6 1.7e-227 785.8
Cmetu03g1976 . 31 582 Nodulin-like Gene Family AT2G39210 63.9 1.5e-207 719.5
Cmetu04g1671 . 17 560 Nodulin-like Gene Family AT2G39210 59.2 5.1e-187 651.4
Cmetu12g0238 . 22 579 Nodulin-like Gene Family AT2G39210 58.0 1.9e-186 649.4
Cmetu10g1773 . 14 535 Nodulin-like Gene Family AT2G39210 62.2 8.4e-182 634.0
Cmetu08g1779 . 28 588 Nodulin-like Gene Family AT2G39210 56.1 6.0e-180 627.9
Cmetu04g1849 . 11 539 Nodulin-like Gene Family AT2G39210 55.1 2.3e-171 599.4
Cmetu04g0815 . 11 462 Nodulin-like Gene Family AT2G39210 51.7 5.5e-149 525.0
Cmetu08g0689 . 16 514 Nodulin-like Gene Family AT2G39210 51.1 1.6e-143 506.9
Cmetu07g1055 . 6 564 Nodulin-like Gene Family AT3G01630 52.8 2.8e-150 529.3
Cmetu03g0582 . 20 414 Nodulin-like Gene Family AT3G01930 69.4 1.3e-152 536.6
Cmetu02g0254 . 4 532 Nodulin-like Gene Family AT1G18940 55.0 2.1e-168 589.3
Cmetu02g2013 . 3 520 Nodulin-like Gene Family AT1G18940 52.5 8.2e-157 550.8
Cmetu02g0192 . 7 520 Nodulin-like Gene Family AT1G18940 52.3 1.6e-152 536.6
Cmetu02g0254 . 5 539 Nodulin-like Gene Family AT2G34350 56.0 1.5e-163 573.2
Cmetu02g2013 . 8 522 Nodulin-like Gene Family AT2G34350 54.4 3.2e-153 538.9
Cmetu02g0192 . 11 525 Nodulin-like Gene Family AT2G34350 54.9 1.0e-151 533.9
Cmetu12g0238 . 16 582 Nodulin-like Gene Family AT2G28120 68.5 3.6e-222 768.1
Cmetu10g0138 . 9 574 Nodulin-like Gene Family AT2G28120 60.3 1.2e-193 673.3
Cmetu03g1976 . 29 603 Nodulin-like Gene Family AT2G28120 57.4 8.7e-184 640.6
Cmetu04g1671 . 14 546 Nodulin-like Gene Family AT2G28120 57.5 9.6e-175 610.5
Cmetu08g1779 . 31 593 Nodulin-like Gene Family AT2G28120 54.8 5.4e-170 594.7
Cmetu04g1849 . 15 523 Nodulin-like Gene Family AT2G28120 56.2 5.3e-165 578.2
Cmetu12g1341 . 3 576 Nodulin-like Gene Family AT2G28120 52.4 6.9e-165 577.8
Cmetu12g1477 . 14 563 Nodulin-like Gene Family AT2G28120 51.1 6.7e-160 561.2
Cmetu12g1071 . 3 572 Nodulin-like Gene Family AT2G28120 50.2 3.3e-159 558.9
Cmetu10g1773 . 8 539 Nodulin-like Gene Family AT2G28120 51.7 2.1e-153 539.7
Cmetu12g1209 . 7 562 Nodulin-like Gene Family AT2G28120 50.2 1.4e-149 526.9
Cmetu04g0815 . 15 471 Nodulin-like Gene Family AT2G28120 50.3 6.3e-142 501.5
Cmetu07g1055 . 1 569 Nodulin-like Gene Family AT1G31470 56.9 7.9e-169 590.9
Cmetu11g0916 . 28 421 Nodulin-like Gene Family AT1G31470 53.7 3.5e-108 389.4
Cmetu01g2412 . 28 217 Nodulin-like Gene Family AT1G76800 77.4 4.4e-71 264.6
Cmetu03g0803 . 18 190 Nodulin-like Gene Family AT1G76800 65.4 1.1e-56 216.9
Cmetu05g1677 . 1 162 Nodulin-like Gene Family AT1G76800 58.0 7.1e-45 177.6
Cmetu01g2412 . 35 217 Nodulin-like Gene Family AT3G25190 64.2 1.6e-58 223.0
Cmetu05g1677 . 1 162 Nodulin-like Gene Family AT3G25190 64.0 5.8e-48 188.0
Cmetu03g0803 . 24 190 Nodulin-like Gene Family AT3G25190 54.7 4.2e-46 181.8
Cmetu01g2412 . 30 217 Nodulin-like Gene Family AT1G21140 74.5 2.2e-70 262.3
Cmetu03g0803 . 4 190 Nodulin-like Gene Family AT1G21140 62.6 8.8e-59 223.8
Cmetu05g1677 . 1 162 Nodulin-like Gene Family AT1G21140 60.5 2.2e-49 192.6
Cmetu01g2412 . 30 214 Nodulin-like Gene Family AT3G43630 74.6 1.4e-69 259.6
Cmetu03g0803 . 7 187 Nodulin-like Gene Family AT3G43630 65.0 2.6e-58 222.2
Cmetu05g1677 . 1 159 Nodulin-like Gene Family AT3G43630 61.3 3.8e-46 181.8
Cmetu01g2412 . 26 217 Nodulin-like Gene Family AT3G43660 72.4 5.8e-71 264.2
Cmetu03g0803 . 4 190 Nodulin-like Gene Family AT3G43660 63.7 3.3e-58 221.9
Cmetu05g1677 . 1 162 Nodulin-like Gene Family AT3G43660 59.3 1.2e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244