Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1928 ATGCCCTTAACATGGTTGAGCAATATGGGAAACCGGGTGAGCTCGTCGGGTAAACGGAGTGACGGCGGTGTAAAGGGTGGAAAAACGGCTGCCGTCGGGAAAGAACCGTCGCTTAAGAAGACTGACAGCGGCGGGGGCGGAAGTAGTCGTGGAAAGTCGTTGTGGCGGCCTGAGAAGAAGGTTTATTTTCCGAAGAAATATGGTTTCATAGCAGATAACTTCTCCTCTATTGACCAGGTTACCTCAGCTTTGAGAAAAGAAGGATTAGAATCGTCCAACCTCATCGTCGGAATTGATTTCACCAAAAGCAACGAATGGACAGGTAAAGTATCATTCAATAATCGGAGCTTGCACGCCGTTTCCGGTTCTCCTAATCCCTACGAGAAGGCTCTGTCCATCATTGGGAAAACTCTGGCTCCCTTCGATGAAGACGGCTTAATTCCTTGCTTCGGTTTCGGTGACGCGACAACACACGATCAAATGGTGTTCGGTTTTCACAATGACAATTCGCCATGCCATGGATTTGAAGAAGTTCTTGACTGCTACAAAAACATAATTCCCAATGTTCAACTATCAGGACCAACTTCTTACGGTCCAGTCGTTGAAGCTGCAATGGATATTGTGGAGAAGAGTGGTGGGCAATTTCATATTCTCCTCATCGTTGCTGACGGACAGGTTACTCGAAGCTCCAGTATTGGCGATGGTGAATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTTGATGCAAGTGCATATCCTCTTTCACTCATTCTTGTTGGAGTTGGAGATGGTCCTTGGGACGACATGAAGAAGTTCGACGACAAGATTCCAGCTCGGGATTTCGATAATTTCCAGTTTGTTAACTTCACTGAAATAATGTCGAAAAACATTGGCGTGCCGGAAAAAGAAGCAGCTTTTGCTTTAGCTGCACTAATGGAGGTTCCTTTCCAGTACAAAGCAGTCACAGAAATGGGTCTTATAGGACATGTGACAGGGAAAGCAAAACGAATTGTGCCACGACCCCCACCGACACGTTATACTCGTCCTACACGACTAACTTCTGTACTAAACACCTCCTCAACTTCTGCGTCTGATGAACATAGTCAGGTCTGCCCCATTTGCTTGACCGCGGGAAAGGACTTGGCCTTTGGATGCGGCCACATGACTTGTAGAGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGCCAGCCTATCAGAAACCGAATAAGACTGTATACTGGGTGA 1257 46.3 MPLTWLSNMGNRVSSSGKRSDGGVKGGKTAAVGKEPSLKKTDSGGGGSSRGKSLWRPEKKVYFPKKYGFIADNFSSIDQVTSALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNRSLHAVSGSPNPYEKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQMVFGFHNDNSPCHGFEEVLDCYKNIIPNVQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSSIGDGELSVQEEKTIKAIVDASAYPLSLILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSKNIGVPEKEAAFALAALMEVPFQYKAVTEMGLIGHVTGKAKRIVPRPPPTRYTRPTRLTSVLNTSSTSASDEHSQVCPICLTAGKDLAFGCGHMTCRECGSRLSNCHICRQPIRNRIRLYTG 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8436583 8446551 + PI0027769.1 Cmetu11g1928 370660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1928 418 MobiDBLite consensus disorder prediction 1 53 - -
Cmetu11g1928 418 Pfam Copine 116 329 IPR010734 -
Cmetu11g1928 418 ProSiteProfiles Zinc finger RING-type profile. 373 406 IPR001841 -
Cmetu11g1928 418 SUPERFAMILY vWA-like 93 274 IPR036465 -
Cmetu11g1928 418 PANTHER COPINE FAMILY PROTEIN 1 64 393 - -
Cmetu11g1928 418 SMART VWA_4 91 294 IPR002035 -
Cmetu11g1928 418 MobiDBLite consensus disorder prediction 1 18 - -
Cmetu11g1928 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 417 IPR013083 -
Cmetu11g1928 418 SUPERFAMILY RING/U-box 369 413 - -
Cmetu11g1928 418 Pfam Zinc finger, C3HC4 type (RING finger) 371 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1928 K16280 - - csv:101218058 748.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g1900 Cmetu-Chr8:18003518 Cmetu11g1928 Cmetu-Chr11:8436583 1.60E-119 dispersed
Cmetu10g1530 Cmetu-Chr10:18110440 Cmetu11g1928 Cmetu-Chr11:8436583 1.20E-126 dispersed
Cmetu11g1928 Cmetu-Chr11:8436583 Cmetu02g0043 Cmetu-Chr2:24676455 5.80E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1179 . . . . Bpe07g00480 . . . . . . . . . . . . . . . . . . . Cla02g01840 Cam02g1946 Cec02g1973 Cco02g2012 . . Cre02g2188 . . . . . . . Cme11g01654 . . . . . . . . Sed05g3319 . . . . . . . Cpe05g01024 Bhi10g00922 Tan05g0573 Cmetu11g1928 . Hepe08g0658 . . . . . . . . . . Csa06g01141 Chy11g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002870 1 4 2 0 1 1 1 2 2 2 1 1 3 2 2 3 1 3 3 2 2 2 1 2 2 2 2 2 2 1 55