Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g1981 ATGGCTCAAGAGGAGTTTGCTTTGCCATTGGAAGAAGAAGGAAGAAGCTTTGATGAACAAACTTCTTCTTCTTCCTCTTTTCTCTCAAGGTTTCTTCTTTACATTGGTGCTCATGAACTTTTCTCACAAGAGATGTGGAAAGCAGCAATGACAGAATTAGTAGCGACGGCCCTTCTAATATTTTGCTTAACAACTTCCATCGTCTCATGCTTGAACTCACACCAATCAGATCCAAAGCTCTTAATCCCAATCGCCGTTTTCATCATCCTCTTCCTCTTCCTCCTCGTCACTTTCCCGCTCTCCGGCGGCTTCCTGAGCCCCATCTTCGCCTTCATTGCTGCCCTCCATGGCGTCATTACCTTCACACGCGCCACCGTCTACATTCTCGCCCAATGCCTCGGCTCCATTCTCGCCTTTCTCATGATCAAAGATGCAATGAGCCCCGATGTAGCTGACAAATACTCTCTCGGCGGCTGCACCATCCGTGGCACCGGCGACACTCCCGGCCTCGGCCTCACCACGGCTCTCGTCCTCGAATTCGCGTGCACATTCGTCGTTCTCTACGTCGGAGTCACGGTGGTGCTCGACGAGAAGATGAGCGAGCGGCTTGGTTTGCCAATGGTGTGTGGGATGATTGCGGCGAGTTCGGCGGTGGCAGTTTTTGTGTCGACGACAATCACCGGGCGGGCGGGGTATGGTGGGGTGGGGCTGAATCCGGCAAGGTGTTTGGGGCCGGCGGTGTTGAGAGGAGGGCGGTTGTGGGAGGGGCATTGGGTGTTTTGGGTGGGGCCGTTTGTGGCGTGTGTGGTTTATTATGGATTTTCGATGAATTTGCCGAAGGGGCTGTTGGTTGGAGCGAATGGAGAGATTGGGGTTTTGAAGATGGTCGGAGGTTGTTGGCGGCGGCGGCGCCAAAAGTTGAAGGGAAAGTTGAGGCAAAATGTTGATCAACTTTGA 957 53.19 MAQEEFALPLEEEGRSFDEQTSSSSSFLSRFLLYIGAHELFSQEMWKAAMTELVATALLIFCLTTSIVSCLNSHQSDPKLLIPIAVFIILFLFLLVTFPLSGGFLSPIFAFIAALHGVITFTRATVYILAQCLGSILAFLMIKDAMSPDVADKYSLGGCTIRGTGDTPGLGLTTALVLEFACTFVVLYVGVTVVLDEKMSERLGLPMVCGMIAASSAVAVFVSTTITGRAGYGGVGLNPARCLGPAVLRGGRLWEGHWVFWVGPFVACVVYYGFSMNLPKGLLVGANGEIGVLKMVGGCWRRRRQKLKGKLRQNVDQL 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28204236 28207352 - PI0021855.1 Cmetu11g1981 370713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g1981 318 PANTHER AQUAPORIN-LIKE 23 296 - -
Cmetu11g1981 318 Pfam Major intrinsic protein 42 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmetu11g1981 318 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmetu11g1981 318 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmetu11g1981 318 PRINTS Major intrinsic protein family signature 178 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmetu11g1981 318 PRINTS Major intrinsic protein family signature 47 66 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmetu11g1981 318 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmetu11g1981 318 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmetu11g1981 318 SUPERFAMILY Aquaporin-like 45 270 IPR023271 -
Cmetu11g1981 318 Gene3D Glycerol uptake facilitator protein. 33 279 IPR023271 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g1981 K09866 - - csv:101208503 474.167
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g88 . Blo15g00657 . . . . . . . . . Cma20g00773 . Car20g00676 . . . . . . . . . . . . . . . . . . Cone8ag1256 . Cone10ag1186 Lsi10g00459 . Chy11g00301 . . . . . . . . . Sed01g0227 . . . . . . . . Bhi10g01899 Tan05g1199 Cmetu11g1981 . Hepe08g0951 . . Cla02g01120 Cam02g1193 Cec02g1182 . Clacu02g1182 Cmu02g1142 . . Csa02g01348 . Cme11g00423
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010832 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 2 32