Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g2191 ATGGGTTGTCAATGTTCCAAGCCTTCTGTTGATGAAGATGGCAAAAACAGAGCCACTGAGAAATTTCCTTCACGAAAGGCTTCACGAGTTAATTTATTAAGAAAAGGAGATGATATGGGATTGAATTCTTTGAAAAGAGATGAAGACGTTCGAATAAATTCCTCACAGAGATCAGATAGTATTCGATCAAAGGTGAAAACAGATGGTGGTGACATGAAACTTGCTTATTTGGATAAGAGAGTCAACGGCTCTAATAGAGTACACGATGATCAAGTTGAAAAAAAGAAGAGGGAGAGGTTGGAAGCTGCCATTTCTGCTAATTATCCTGGTAAAGGAAGCATTCCAAAGGCTACGGAAGCAGAGCAGGTTGCAGCTGGTTGGCCAAGCTGGCTCTCCTCTGTTGCCGGTGAGGCGCTTGAGGGATGGCTGCCACGGAAAGCCGAAACTTTCGAGAAACTTGACAAGATAGGACAGGGCACGTATAGTAGTGTTTACAAGGCTCGTGATATCATTCACAATAAACTAGTTGCTCTAAAACGAGTTCGATTTGATAATCTTGATGTGGAGAGTGTGAAGTTTATGGCCCGGGAAATCCTTATCCTGCGTAGGCTTGATCATCCAAATATTATAAAATTGGAAGGCTTGATTACATCACCGCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAGCATGACCTTACTGGGCTCGCATCTCGGCCTGGTGTCAAGTTCAGCGAACCACAGGTCAAATGCTATATGCAACAACTTCTAAGGGGACTTGATTATTGCCACAGTCGTGGTGTCCTCCACCGTGATATAAAGGGTTCAAATCTCCTAATTGACGACAATGGGATCTTGAAGATTGCAGATTTTGGATTAGCAAGTCTTTTTGACCCTCATAATCAAGTTCCTTTAACAAGTCGTGTAGTTACTCTATGGTACCGACCACCAGAACTTCTACTTGGAGCTTCTCATTATGGGGTTGCAGTGGACCTGTGGAGTACAGGCTGCATACTAGCTGAGCTATATGCTGGGAAACCTATCTTACCTGGAAAAACTGAGGTCGAACAGTTGCATAAGATATTTAAACTTTGTGGTTCGCCGCCGGAGAATTATTGGAAGAAACTGCAGTTACCTCATTCAACTGGATTCAAAACAGCTCAGCCATACCGACGTTGTATTGGGGAAATGTTGAAGGATTTCCCATCTTCTGCGGTGGCTCTTGTGGATAAGTTGCTTTCAGTAGATCCTGCTCATCGGGGAACAGCAGCTGCTGCTCTAAAGAGTGAGTTCTTTACGACTAAACCACTTGCATGCGAGCCTACAAGTTTGCCCAAATATCCTCCCAGCAAAGAGATCGATGCAAAATTCCACGGCTGCAGAAGGCAGTCAAGAGTTGAGGGCAAAGACCCTAAAGATTATGGGGAAGGGAGGCGACCTAAAGAAGCTCACCTCAATCTTTCTCTGAATGCTAGGGATGAAATAAACATGATGCAGAAAAGGCAAGGTCATTCAAGTTTTAAGGGCCGGAGTGGTGTGTTGAATCCTCATGGGGATGAAACAGTTTCTGGTTTATTGAATGGTCCGCCCAAACAATCTGTCACAGAAATTTGCTCAGATACAGGCAGGATTTCACATTCAGGACCACTAATTAGCAAACCAGATTGGATGAAATCTAGAAAGCAACTTGATGATCATTCGATGGCGCTTGACGGATCCAATCTCTCAGTATTATCCCGTTTAGTAGCAACGAGGTCTAATATATCTGATCATCCCCATGATAGACCAGGTCCATCACGATCAGAAGTAGGCAGATTGCCCGACTTCGTTAGGGATTCAGAGTCAACGAGAAAGCAGGACCGGATATTTTATACACACCGAGTTGCAGATTCATATCGAGTAGAGAACGAAAAGGCTTGTGCTAAAGAACAGTCCCTGCTTGCTTATGGGACAGACATGAATAAGCTTTATACTTCTGGCCCAATCCTTGGTCCATCAAACAACTTGGATAGGATTCTAAAAGAACGAGACCGTCAGATTCAAGAATATGCTCGACAAGCACGACACGGTAAAGCTGGTAACAATCAGTTTAAGGGTTCAAGAGCAACAACTGGAAAACATCTGATGTCGAGCCATGGAATGTGA 2151 43.79 MGCQCSKPSVDEDGKNRATEKFPSRKASRVNLLRKGDDMGLNSLKRDEDVRINSSQRSDSIRSKVKTDGGDMKLAYLDKRVNGSNRVHDDQVEKKKRERLEAAISANYPGKGSIPKATEAEQVAAGWPSWLSSVAGEALEGWLPRKAETFEKLDKIGQGTYSSVYKARDIIHNKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNIIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSRGVLHRDIKGSNLLIDDNGILKIADFGLASLFDPHNQVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEQLHKIFKLCGSPPENYWKKLQLPHSTGFKTAQPYRRCIGEMLKDFPSSAVALVDKLLSVDPAHRGTAAAALKSEFFTTKPLACEPTSLPKYPPSKEIDAKFHGCRRQSRVEGKDPKDYGEGRRPKEAHLNLSLNARDEINMMQKRQGHSSFKGRSGVLNPHGDETVSGLLNGPPKQSVTEICSDTGRISHSGPLISKPDWMKSRKQLDDHSMALDGSNLSVLSRLVATRSNISDHPHDRPGPSRSEVGRLPDFVRDSESTRKQDRIFYTHRVADSYRVENEKACAKEQSLLAYGTDMNKLYTSGPILGPSNNLDRILKERDRQIQEYARQARHGKAGNNQFKGSRATTGKHLMSSHGM 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12783188 12787386 - PI0027899.1 Cmetu11g2191 370923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g2191 716 MobiDBLite consensus disorder prediction 588 619 - -
Cmetu11g2191 716 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524
Cmetu11g2191 716 MobiDBLite consensus disorder prediction 688 716 - -
Cmetu11g2191 716 MobiDBLite consensus disorder prediction 589 619 - -
Cmetu11g2191 716 CDD STKc_CDK9_like 150 434 - -
Cmetu11g2191 716 MobiDBLite consensus disorder prediction 698 716 - -
Cmetu11g2191 716 MobiDBLite consensus disorder prediction 463 482 - -
Cmetu11g2191 716 PANTHER CELL DIVISION PROTEIN KINASE 148 439 - -
Cmetu11g2191 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Cmetu11g2191 716 FunFam probable serine/threonine-protein kinase At1g54610 233 472 - -
Cmetu11g2191 716 FunFam probable serine/threonine-protein kinase At1g54610 137 232 - -
Cmetu11g2191 716 Gene3D Phosphorylase Kinase; domain 1 137 232 - -
Cmetu11g2191 716 SUPERFAMILY Protein kinase-like (PK-like) 145 439 IPR011009 -
Cmetu11g2191 716 MobiDBLite consensus disorder prediction 39 65 - -
Cmetu11g2191 716 ProSiteProfiles Protein kinase domain profile. 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu11g2191 716 Pfam Protein kinase domain 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu11g2191 716 MobiDBLite consensus disorder prediction 10 24 - -
Cmetu11g2191 716 MobiDBLite consensus disorder prediction 1 65 - -
Cmetu11g2191 716 Gene3D Transferase(Phosphotransferase) domain 1 233 472 - -
Cmetu11g2191 716 SMART serkin_6 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g2191 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g0864 Cmetu-Chr10:21141904 Cmetu11g2191 Cmetu-Chr11:12783188 3.60E-61 dispersed
Cmetu11g2191 Cmetu-Chr11:12783188 Cmetu12g1045 Cmetu-Chr12:3336050 3.90E-149 dispersed
Cmetu11g2191 Cmetu-Chr11:12783188 Cmetu11g0085 Cmetu-Chr11:12792930 2.70E-163 tandem
Cmetu05g1656 Cmetu-Chr5:22835103 Cmetu11g2191 Cmetu-Chr11:12783188 3.00E-87 transposed
Cmetu06g0566 Cmetu-Chr6:8655178 Cmetu11g2191 Cmetu-Chr11:12783188 4.00E-187 transposed
Cmetu10g0076 Cmetu-Chr10:7068931 Cmetu11g2191 Cmetu-Chr11:12783188 1.00E-20 wgd
Cmetu11g2191 Cmetu-Chr11:12783188 Cmetu04g0042 Cmetu-Chr4:20814822 1.30E-06 wgd
Cmetu11g2191 Cmetu-Chr11:12783188 Cmetu04g2753 Cmetu-Chr4:10474466 8.00E-30 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0864 . 1 294 Core Cell Cycle Gene Families AT3G48750 86.1 2.2e-151 531.9
Cmetu08g0441 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 7.7e-96 347.4
Cmetu07g2307 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.7 1.5e-94 343.2
Cmetu08g0441 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.5 1.5e-153 539.3
Cmetu07g2307 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.3 9.9e-118 420.2
Cmetu10g0864 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 2.4e-92 335.9
Cmetu08g0441 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 3.7e-123 438.0
Cmetu07g2307 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.2 1.5e-92 336.3
Cmetu07g2307 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 4.1e-156 547.7
Cmetu08g0441 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 5.9e-118 421.0
Cmetu10g0864 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 1.3e-93 340.1
Cmetu07g2307 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 1.4e-159 559.3
Cmetu08g0441 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 2.2e-120 429.1
Cmetu10g0864 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.7e-97 351.3
Cmetu04g0665 . 1 516 Core Cell Cycle Gene Families AT5G10270 71.7 1.2e-208 723.0
Cmetu05g1656 . 159 670 Core Cell Cycle Gene Families AT5G10270 67.3 3.8e-191 664.8
Cmetu06g0566 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 1.9e-97 353.6
Cmetu06g2566 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.6 1.6e-96 350.5
Cmetu09g1868 . 137 453 Core Cell Cycle Gene Families AT5G10270 52.7 2.7e-96 349.7
Cmetu11g2191 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.3 6.6e-95 345.1
Cmetu10g1362 . 147 463 Core Cell Cycle Gene Families AT5G10270 51.8 1.5e-94 344.0
Cmetu12g1045 . 137 440 Core Cell Cycle Gene Families AT5G10270 53.8 2.1e-93 340.1
Cmetu05g1477 . 101 419 Core Cell Cycle Gene Families AT5G10270 50.7 6.2e-93 338.6
Cmetu12g0439 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.7 5.2e-92 335.5
Cmetu11g0085 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.6 7.5e-91 331.6
Cmetu02g1545 . 99 378 Core Cell Cycle Gene Families AT5G10270 51.1 9.5e-86 314.7
Cmetu04g0665 . 65 515 Core Cell Cycle Gene Families AT5G64960 71.1 3.0e-171 598.6
Cmetu05g1656 . 242 669 Core Cell Cycle Gene Families AT5G64960 68.5 1.1e-168 590.1
Cmetu06g0566 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 1.7e-81 300.4
Cmetu11g2191 . 196 458 Core Cell Cycle Gene Families AT5G64960 53.2 3.8e-81 299.3
Cmetu12g1045 . 178 440 Core Cell Cycle Gene Families AT5G64960 52.9 4.9e-81 298.9
Cmetu11g0085 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.6 5.4e-80 295.4
Cmetu06g2566 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.4 1.6e-79 293.9
Cmetu09g1868 . 191 453 Core Cell Cycle Gene Families AT5G64960 52.9 1.6e-79 293.9
Cmetu10g1362 . 201 463 Core Cell Cycle Gene Families AT5G64960 52.5 3.5e-79 292.7
Cmetu02g1545 . 153 378 Core Cell Cycle Gene Families AT5G64960 50.8 1.1e-69 261.2
Cmetu02g1578 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.0 6.2e-173 604.0
Cmetu02g1578 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.4 3.9e-155 544.7
Cmetu02g1578 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.0 9.4e-174 606.7
Cmetu08g0683 . 30 482 Core Cell Cycle Gene Families AT5G63610 78.3 1.3e-201 699.5
Cmetu05g0645 . 1 481 Core Cell Cycle Gene Families AT4G28980 63.2 3.6e-175 611.7
Cmetu03g0063 . 5 537 Core Cell Cycle Gene Families AT1G44110 55.5 4.5e-143 505.0
Cmetu04g0507 . 203 469 Core Cell Cycle Gene Families AT1G44110 56.2 4.3e-85 312.4
Cmetu03g2153 . 266 543 Core Cell Cycle Gene Families AT1G44110 52.1 1.4e-75 280.8
Cmetu01g1734 . 170 329 Core Cell Cycle Gene Families AT1G44110 50.5 4.8e-44 176.0
Cmetu04g0507 . 203 469 Core Cell Cycle Gene Families AT1G77390 52.4 2.3e-75 280.0
Cmetu03g2153 . 266 523 Core Cell Cycle Gene Families AT1G77390 51.2 4.2e-69 259.2
Cmetu04g0507 . 10 481 Core Cell Cycle Gene Families AT5G25380 53.5 1.1e-117 420.6
Cmetu03g2153 . 145 539 Core Cell Cycle Gene Families AT5G25380 53.7 9.2e-101 364.4
Cmetu01g1482 . 120 343 Core Cell Cycle Gene Families AT5G25380 51.6 3.0e-59 226.5
Cmetu04g0507 . 3 419 Core Cell Cycle Gene Families AT5G11300 51.4 3.9e-93 339.0
Cmetu03g2153 . 259 477 Core Cell Cycle Gene Families AT5G11300 69.9 7.1e-79 291.6
Cmetu03g0176 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.3e-60 229.6
Cmetu03g2153 . 232 539 Core Cell Cycle Gene Families AT1G15570 53.0 2.2e-86 316.6
Cmetu01g1734 . 154 329 Core Cell Cycle Gene Families AT1G80370 54.0 8.5e-49 191.8
Cmetu03g0176 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.8 4.0e-115 411.8
Cmetu07g2012 . 1 381 Core Cell Cycle Gene Families AT5G43080 53.1 8.3e-105 377.5
Cmetu04g0507 . 205 471 Core Cell Cycle Gene Families AT5G43080 54.7 6.0e-79 291.6
Cmetu03g0176 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.6 2.9e-124 442.2
Cmetu07g2012 . 1 381 Core Cell Cycle Gene Families AT1G47210 51.2 4.0e-105 378.6
Cmetu04g0507 . 191 471 Core Cell Cycle Gene Families AT1G47210 51.6 1.3e-76 283.9
Cmetu01g1482 . 84 351 Core Cell Cycle Gene Families AT1G47210 50.6 2.5e-75 279.6
Cmetu03g2153 . 263 529 Core Cell Cycle Gene Families AT1G47210 50.6 1.9e-70 263.5
Cmetu03g0176 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 4.0e-93 338.6
Cmetu07g2012 . 94 379 Core Cell Cycle Gene Families AT1G47220 55.2 7.3e-87 317.8
Cmetu03g0176 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.6 6.5e-116 414.5
Cmetu07g2012 . 1 381 Core Cell Cycle Gene Families AT1G47230 54.1 5.0e-108 388.3
Cmetu01g1482 . 66 351 Core Cell Cycle Gene Families AT1G47230 52.1 1.7e-76 283.5
Cmetu08g1930 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 3.7e-115 412.1
Cmetu08g1930 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 5.0e-83 305.1
Cmetu05g0055 . 104 306 Core Cell Cycle Gene Families AT5G06150 62.7 4.4e-63 238.8
Cmetu08g1930 . 1 406 Core Cell Cycle Gene Families AT3G11520 57.6 8.0e-109 391.0
Cmetu04g1031 . 171 397 Core Cell Cycle Gene Families AT3G11520 51.5 1.8e-60 230.3
Cmetu05g0055 . 14 413 Core Cell Cycle Gene Families AT2G26760 51.0 1.2e-104 377.1
Cmetu04g1031 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 6.5e-128 454.5
Cmetu07g0958 . 37 438 Core Cell Cycle Gene Families AT2G17620 52.4 5.4e-106 381.7
Cmetu04g1031 . 5 397 Core Cell Cycle Gene Families AT4G35620 58.9 1.3e-106 383.6
Cmetu07g0958 . 37 393 Core Cell Cycle Gene Families AT4G35620 52.5 5.9e-88 321.6
Cmetu05g0055 . 139 365 Core Cell Cycle Gene Families AT4G35620 50.9 2.5e-54 209.9
Cmetu07g0958 . 1 436 Core Cell Cycle Gene Families AT1G20610 64.7 3.5e-145 511.9
Cmetu04g1031 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.2 3.7e-123 438.7
Cmetu07g0958 . 1 333 Core Cell Cycle Gene Families AT1G76310 63.3 1.2e-103 373.6
Cmetu04g1031 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.2 4.3e-82 302.0
Cmetu08g1930 . 177 343 Core Cell Cycle Gene Families AT1G76310 52.1 2.8e-41 166.4
Cmetu05g0055 . 135 302 Core Cell Cycle Gene Families AT1G76310 52.9 2.8e-41 166.4
Cmetu01g1284 . 186 641 Core Cell Cycle Gene Families AT1G16330 53.0 2.1e-117 420.2
Cmetu10g0407 . 1 328 Core Cell Cycle Gene Families AT1G70210 62.5 9.8e-103 370.5
Cmetu09g1377 . 1 314 Core Cell Cycle Gene Families AT1G70210 60.5 3.3e-98 355.5
Cmetu06g1092 . 5 335 Core Cell Cycle Gene Families AT4G34160 50.3 2.6e-80 296.2
Cmetu03g1234 . 50 326 Core Cell Cycle Gene Families AT4G34160 50.2 4.8e-66 248.8
Cmetu07g1860 . 68 293 Core Cell Cycle Gene Families AT4G34160 50.9 5.7e-59 225.3
Cmetu08g1365 . 48 271 Core Cell Cycle Gene Families AT5G65420 58.1 5.7e-69 258.1
Cmetu03g1362 . 63 262 Core Cell Cycle Gene Families AT5G65420 56.9 6.7e-62 234.6
Cmetu08g1365 . 53 229 Core Cell Cycle Gene Families AT5G10440 59.3 2.9e-55 212.2
Cmetu03g1362 . 58 236 Core Cell Cycle Gene Families AT5G10440 53.9 5.8e-51 198.0
Cmetu08g1828 . 1 277 Core Cell Cycle Gene Families AT5G27620 66.8 5.6e-102 367.9
Cmetu12g1345 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 6.6e-43 169.9
Cmetu11g2372 . 1 82 Core Cell Cycle Gene Families AT2G27960 95.1 1.5e-42 168.7
Cmetu11g2372 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 4.2e-39 157.1
Cmetu12g1345 . 1 83 Core Cell Cycle Gene Families AT2G27970 84.3 1.2e-38 155.6
Cmetu10g1141 . 31 1024 Core Cell Cycle Gene Families AT3G12280 73.3 0.0e+00 1404.0
Cmetu01g0245 . 2 485 Core Cell Cycle Gene Families AT1G02970 59.3 6.0e-157 551.2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70860 PF00069 Pkinase 6.60E-69 CL0016 Cmetu PK