Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g2217 ATGGAGGTCTTCTTCTCTTCCAACCCTCAATCACTCACCTTCAATCCATGTCTTCCTCTCAATTCTCCTTCCTCCTTCTCCTACTCTCGCCTCCGCTTCGTCCGCCGTCAATTCCTTGGCTCTGCTCACAATCTCCGCCCTCCCGATGCCCTGCGCTCTCGTCGAAGGTGCCGGAACCTTGGCCTCTTTGTTCAATCTCCGAGGTGCATTTTCCGAGCTACCTTCAGTTCCAATCCGGTTCTCATCGTTGTTGCTGTCGTTACTTTCTCTGCTGTCTCCTTCATCTACATGAATTTAAATAGAAGGAAGAAGAATGCGGTTGAGCGTTCCCGATCTCCAAAGCTTGCATTATCTCAACTAGGTAGAGGCATCAACTGGTCTGTTGATGGTCATATAATGGGCTTTAGGGATCATCATGGCGACTTTTTAGAGCAGAACATTGCCGTAAAGGATAGAGCTGAGGAGAAGAGTTATTCTGGGGAAGAAGAGACTGTTCTGCAGCTTCAAAATTCTGGTCTGTCACATGAGGCCAGCGTCACTGAGACATTGCCGTCTTCTGTTTCTGAGCTTACTACTTCTAAGGATAGTGATTCTCTGTTTTCAGATGCAAGTGAAGCAACAGATCCTTCTCTTCTTTCTGCTATATTTGAATCTGGCGTACTGCAGCCTCTTATTTTCGCCAATGACATGACTGACTTACGACTGAACGGATCTCATGTCAAATCCCACTCTGAATTGCCTGTTGTGGTTGATACAACTGAGCTTCCACCTGTAACTGGTCCTTTATATAGTGTGTATGATCAAGTGACTCAACATTTAAAAGAAGATGGTGAGCTTCTAAAAGAGGAAAAATTAAATAGTTCCAACTTTCAAATTGAAGAACCGGCTAGAGAAGATATTTACATGTTCTATGAAGATTCAAAGTCAAGTAATCAAACGGAAACTTCTTCCCGTACTTCTCATCTATACAACCAAAAATTTTCTTCAGTGATGGTTAACGGTGTCTCCAGAGTGGCAGAATTAGTGTTAGAGGATTCTCTTCCAGTTGCAGGAAGGTTCTTCAGGAAACAGCAAAAAATCTGGTGGCAACAATATTTCAAGACATGGGGAAGAAAAGAACCCAGTCTGCATAAAGGAAAAGTTGTGAATGGGTTACCCCATCCAAACGGGAAGCATGTTCATTACAAAAATCTTCATGTAGATCAATATAAATTATATAATCAATGCCTGAAAGGTGGAAGGCTGCACGACTGCATCAGAATACTTCAAGATATGGAAAGAGAAGGGATATTGGATATGAATAAGATTTATCATGGGAAGTTTTTCAATATTTGCAAGAGTAAAAAGGTTGTTCAGGAAGCTTTTCAGTACACTGCACTTATTCAAAACCCCACATTGAGTACATTCAATATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGAAAGAGCTTTCCAAGTTGTGCGGCTTGTCCAGGAGGCTGGAATGAAAGCAGATTGCAAACTGTACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAAGTATTCCACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGTAGGTCAAGTGGCAAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCAGGCGCGGTGGATCGTGCTTTTGACGTGCTTGCAGAAATGGGGGCCGAGTTACATCCTATAGAGCCGGATCATATTACAATTGGTGCTTTGATGAAGGCATGTGCAAATGGTGGTCAGGTCGATCGAGCAAGAGAAGTGTACAAGATGATCCATGATTATAAGATTAAGGGCACACCAGAGGTTTACACCATTGCTGTTAACTGTTGCAGTCAATCTTGTGATTGGGACTTTGCTTCCAATGTATATCAAGATATGACCAGGAAAGGAGTGCAACCCGATGAGATTTTTCTCAGTGCATTAATAGATGTTGCAGGCCATACTGGTAAGCTGGATGCTGCCTTTGAAATCTTAGGAGAAGCCAAGACACTAGGGATACGTGTTGGGATTGTGTCATATAGTTCTTTGATGGGTGCCTGTAGCAATGCTAAAAACTGGCAGAAGGCCTTGGCACTGTATGAGGATCTCAAGTCTATGAAATTGAGGCTAACTGTATCAACCGTAAACGCACTAATAACTGCACTGTGTGATGGGGAACAACTACAAATGGCTATGGATATTCTAACTGAAATGAAGGAATTAGGACTCTCCCCAAACAATATTACATACTCCATACTTACGGCAGCGAGTGAAAGGAATAATGATTTAGAAATTGCCCTGATGCTCCTCTCTCAAGCTAAAGAGGATGGGATTGTGCCGACCTTAACTATGTATAGGTGCATAATTGGCATGTGCTTACGAAGAATTGCAGAGCCCTCTTCCCTTGATAGACCACTCATGTCACTGTACTCTAAACTGCCTCAAGTCGATAGTAAGTGGACAGCACAGGCCTTAATGGTGTACCGGGAAATAATTGAAGCCGGAATTGTTCCAAGCATTGACGTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTCATGATCCCGCCTTAAAAAGTAGACTCATAGAAAACATAGGAGTAAGTGTTGACTCATCAAGATCTTCAAGTCTCTGCTCCTTGATAGATGGCTTTGGTGAATATGACCCTCGTGCATTTTCACTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTGCATTTGTGTCCCTAAAAGGAAATCCTATTGTTGTAGATACCAAGGAGTTGCAGATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAGGTTACCAAACATAATGATCTTACTGCCGAATGAGACAACGCAAATTCTCTCTCCAAAGGGGGAGAGGACCATTAATCTTTCGGGAAGGGTTGGACAAGCAGTTGCGGCATTGTTGAGAAGACTTGGGCTTCCTTACCAGGGGAATGAATCAAGTGGAAAAATCAGAATCAATGGTTTAGCCTTGAGAAGATGGTTACAACCGAAACTTTCCGATTCTCTAAGTGGAAAACCAGGAGAGTTCGGCACGTTTCAGTCACGTCTAAGAAAAGGAATAAGCAACCAGCAGCGTAATATTCGCATTGGGAACCTATCATTGGATTAA 3270 42.87 MEVFFSSNPQSLTFNPCLPLNSPSSFSYSRLRFVRRQFLGSAHNLRPPDALRSRRRCRNLGLFVQSPRCIFRATFSSNPVLIVVAVVTFSAVSFIYMNLNRRKKNAVERSRSPKLALSQLGRGINWSVDGHIMGFRDHHGDFLEQNIAVKDRAEEKSYSGEEETVLQLQNSGLSHEASVTETLPSSVSELTTSKDSDSLFSDASEATDPSLLSAIFESGVLQPLIFANDMTDLRLNGSHVKSHSELPVVVDTTELPPVTGPLYSVYDQVTQHLKEDGELLKEEKLNSSNFQIEEPAREDIYMFYEDSKSSNQTETSSRTSHLYNQKFSSVMVNGVSRVAELVLEDSLPVAGRFFRKQQKIWWQQYFKTWGRKEPSLHKGKVVNGLPHPNGKHVHYKNLHVDQYKLYNQCLKGGRLHDCIRILQDMEREGILDMNKIYHGKFFNICKSKKVVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARVGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKACANGGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNVYQDMTRKGVQPDEIFLSALIDVAGHTGKLDAAFEILGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYEDLKSMKLRLTVSTVNALITALCDGEQLQMAMDILTEMKELGLSPNNITYSILTAASERNNDLEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIAEPSSLDRPLMSLYSKLPQVDSKWTAQALMVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSVDSSRSSSLCSLIDGFGEYDPRAFSLLEEAASLGVAAFVSLKGNPIVVDTKELQIHTAEVYLLTVLKGLKHRLAAGSRLPNIMILLPNETTQILSPKGERTINLSGRVGQAVAALLRRLGLPYQGNESSGKIRINGLALRRWLQPKLSDSLSGKPGEFGTFQSRLRKGISNQQRNIRIGNLSLD 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28189393 28199707 - PI0005069.1 Cmetu11g2217 370949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g2217 1089 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 691 839 - -
Cmetu11g2217 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 642 676 IPR002885 -
Cmetu11g2217 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 600 IPR002885 -
Cmetu11g2217 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 782 816 IPR002885 -
Cmetu11g2217 1089 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 414 545 - -
Cmetu11g2217 1089 MobiDBLite consensus disorder prediction 179 203 - -
Cmetu11g2217 1089 Pfam Pentacotripeptide-repeat region of PRORP 467 603 IPR033443 -
Cmetu11g2217 1089 Pfam Pentacotripeptide-repeat region of PRORP 615 756 IPR033443 -
Cmetu11g2217 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Cmetu11g2217 1089 Gene3D Tetratricopeptide repeat domain 530 616 IPR011990 GO:0005515
Cmetu11g2217 1089 Gene3D Tetratricopeptide repeat domain 617 721 IPR011990 GO:0005515
Cmetu11g2217 1089 Gene3D Tetratricopeptide repeat domain 722 838 IPR011990 GO:0005515
Cmetu11g2217 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 747 781 IPR002885 -
Cmetu11g2217 1089 NCBIfam pentatricopeptide repeat 503 536 IPR002885 -
Cmetu11g2217 1089 NCBIfam pentatricopeptide repeat 645 678 IPR002885 -
Cmetu11g2217 1089 NCBIfam pentatricopeptide repeat 537 570 IPR002885 -
Cmetu11g2217 1089 NCBIfam pentatricopeptide repeat 714 746 IPR002885 -
Cmetu11g2217 1089 NCBIfam pentatricopeptide repeat 750 782 IPR002885 -
Cmetu11g2217 1089 NCBIfam pentatricopeptide repeat 610 640 IPR002885 -
Cmetu11g2217 1089 NCBIfam pentatricopeptide repeat 468 501 IPR002885 -
Cmetu11g2217 1089 Gene3D Tetratricopeptide repeat domain 386 529 IPR011990 GO:0005515
Cmetu11g2217 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Cmetu11g2217 1089 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 599 690 - -
Cmetu11g2217 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 712 746 IPR002885 -
Cmetu11g2217 1089 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 2 1088 - -
Cmetu11g2217 1089 Pfam Pentatricopeptide repeat domain 789 828 IPR002885 -
Cmetu11g2217 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g2217 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35