Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g2266 ATGAAGATCAACATCGATAGGGAGGCGCGGAAAGTTGCCGTTGATAATCGAATTCCTCTCCGGAATTACTTCCGGATCGCCGATAATCTCTTAAAACAGGCTGATATTTATCGGGAAGAGAACAATGTTGTGGATTTGTTCATTATACTTCTTAGGTTTTCAAGTTTGGTTTCTGAAACTATACCACGGCATCGTGATTATCAAGCTTTTTCCCAAAGGAGAAGATATACTATAAGAAGTTGTTTCATGTTGTCCTGCCAGAAACTACTGAATGTAGTGGATGAACTTGAGTCCTTAAAGCCCGAATTTGATCGCCGGGTAAATGAACTGGAGAAAGTGTATGGACGACCTCGTCTTCCTCCACCTAACGAGCAGGGAAGTGTTTCAACCAGTTTGCGGCCTTCTCCTAAGGAACAGCTGTATGCAAATGGAAATTATTCGTTAATGTTGGATCAAAAGCAGCATGTGAATTCACGTCCCCAATCTTCATGGAGGTATAGTGATGACCGAGGCCAAGTTTCACAATCAAGTTCCTTAAGGCTTGAGAACAAGTTCTCAACTCTGTCTCTTAATGTACCGCTTCCCAAACCCGAAACTTTATCTAGACATTCTATTTTGGGACCCAGTGGTCTTCAGGGCCAATGGAAGGGGCCAAGTACGGATAAGATTCAATATCCAAGAAATCAGGACTTTACTCCTGAAGATTCAAGACTGAATCAAAGTGAACAATGTGATCTAGTGGCACACAAAGATAGTGGTCCAGGTGGTGTTATGTCAATGATGGAATCGGTGCTCTCACTAGATGATGGTGGATGGCCTCATCCCGCAGACATGTCTACTCCTCCGTTGATAACAGAAGTAAGGGAGGATTCTTTCCCATTGGTCAAACAACCTTCTCCTCCTCCTGTGCTTGCTAAGGTTCAGCAGGAGTATGCGACAATTCCCCCATCTAAAGTTGCAGATCCAAGGCCTGGAGTGGCAAGGCAATCACAGGATGAGTCTGAATCGTTTCAACGTTTACACATTGTAGGCCTTTTTAATTTTTCCAGTAAAATGCTTGATGATTTCTTGAGATTGGCTCGGGAAAATACAAATAAGAACCTGGAAACTTGTGGTGTTTTAGCTGGCTCTCTGAAAAACAGGGTTTTTTACATTTCTACGCTCATTATCCCAAAGCAAGAATCAACATCAGATTCCTGTCAGACGTTGAACGAAGAGGAAATATTTGAAGTTCAAGACAGATTATCACTTTTCCCGCTTGGTTGGATCCATACACACCCATCACAAACCTGTTTTATGTCGTCTGTGGATTTGCACACGCATTACTCGTACCAGATTATGCTACCAGAAGCAATTGCAATCGTCATGGCTCCAACCGATAAGTCAAGTCCATATGGAATATTTCATCTATCCGATCCAGGTGGTGTATCAGTCATCCGTAACTGCCAACAGCGCGGATTTCATCCCCACGAGGAGCCTGACGATGGGAGTCCACTCTATGAACACTGCTCTCATGTTATGATGAATCCAAACGCAAAGTTTGACGTTATGGATCTAAGGTAA 1563 43.12 MKINIDREARKVAVDNRIPLRNYFRIADNLLKQADIYREENNVVDLFIILLRFSSLVSETIPRHRDYQAFSQRRRYTIRSCFMLSCQKLLNVVDELESLKPEFDRRVNELEKVYGRPRLPPPNEQGSVSTSLRPSPKEQLYANGNYSLMLDQKQHVNSRPQSSWRYSDDRGQVSQSSSLRLENKFSTLSLNVPLPKPETLSRHSILGPSGLQGQWKGPSTDKIQYPRNQDFTPEDSRLNQSEQCDLVAHKDSGPGGVMSMMESVLSLDDGGWPHPADMSTPPLITEVREDSFPLVKQPSPPPVLAKVQQEYATIPPSKVADPRPGVARQSQDESESFQRLHIVGLFNFSSKMLDDFLRLARENTNKNLETCGVLAGSLKNRVFYISTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDKSSPYGIFHLSDPGGVSVIRNCQQRGFHPHEEPDDGSPLYEHCSHVMMNPNAKFDVMDLR 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3880162 3884997 + PI0029077.1 Cmetu11g2266 370998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g2266 520 Coils Coil 93 113 - -
Cmetu11g2266 520 SUPERFAMILY JAB1/MPN domain 348 476 - -
Cmetu11g2266 520 SMART pad1_6 345 473 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmetu11g2266 520 Gene3D Cytidine Deaminase, domain 2 326 520 - -
Cmetu11g2266 520 Pfam USP8 dimerisation domain 8 106 IPR015063 -
Cmetu11g2266 520 MobiDBLite consensus disorder prediction 205 221 - -
Cmetu11g2266 520 CDD MPN_AMSH_like 348 520 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Cmetu11g2266 520 ProSiteProfiles MPN domain profile. 346 476 IPR037518 -
Cmetu11g2266 520 MobiDBLite consensus disorder prediction 158 178 - -
Cmetu11g2266 520 PANTHER AMSH-LIKE PROTEASE 3 520 - -
Cmetu11g2266 520 MobiDBLite consensus disorder prediction 201 221 - -
Cmetu11g2266 520 MobiDBLite consensus disorder prediction 123 137 - -
Cmetu11g2266 520 FunFam AMSH-like protease sst2 326 520 - -
Cmetu11g2266 520 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 348 449 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmetu11g2266 520 MobiDBLite consensus disorder prediction 114 137 - -
Cmetu11g2266 520 Gene3D - 3 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g2266 K11866 - - csv:101209152 948.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g2266 Cmetu-Chr11:3880162 Cmetu12g0605 Cmetu-Chr12:1295978 5.90E-123 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g103 Blo01g00056 . . Bda08g00309 . . . Bma05g01019 Cmo08g01232 Cmo17g00347 . . . . . . . . . . . . . . Cla06g00441 Cam06g0468 Cec06g0474 . Clacu06g0455 Cmu06g0456 Cre06g1231 . . Cone7ag0112 Cone4ag0116 . Csa06g01758 Chy11g01553 . . . . . Bpe05g00819 . . . Sed04g1761 . . Cma08g01262 Cma17g00357 Car08g01132 Car17g00328 Cpe12g00309 Cpe17g00053 Bhi12g01907 Tan06g2735 Cmetu11g2266 Lac11g0914 Hepe03g0061 . Lcy12g0785 . . . . . . . Lsi09g01472 . . Cme11g02064